miRNA display CGI


Results 21 - 40 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21219 3' -58.2 NC_004778.3 + 72026 0.67 0.730528
Target:  5'- cGCGACGaGGGCggcuucaucaGCCGCCAGCUgG-Ca -3'
miRNA:   3'- -UGCUGCgCCUG----------UGGUGGUCGAgCaGc -5'
21219 3' -58.2 NC_004778.3 + 2069 0.67 0.730528
Target:  5'- cACGAUcugaugGCGGAuCACC-CCAGUUuCGUCa -3'
miRNA:   3'- -UGCUG------CGCCU-GUGGuGGUCGA-GCAGc -5'
21219 3' -58.2 NC_004778.3 + 107694 0.67 0.730528
Target:  5'- uGCG-CGUGGAgGCCGCCAcGCgcgGUCa -3'
miRNA:   3'- -UGCuGCGCCUgUGGUGGU-CGag-CAGc -5'
21219 3' -58.2 NC_004778.3 + 83033 0.68 0.720791
Target:  5'- uGCGACGCGG-CACgCGCCaaagaguggcagAGCaaGUCGc -3'
miRNA:   3'- -UGCUGCGCCuGUG-GUGG------------UCGagCAGC- -5'
21219 3' -58.2 NC_004778.3 + 34151 0.68 0.701104
Target:  5'- gACGACGCGGuCGCCGgCGGCg----- -3'
miRNA:   3'- -UGCUGCGCCuGUGGUgGUCGagcagc -5'
21219 3' -58.2 NC_004778.3 + 44178 0.68 0.701104
Target:  5'- -gGACGCGGGCGCCGu--GUaugUCGUCGu -3'
miRNA:   3'- ugCUGCGCCUGUGGUgguCG---AGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 108349 0.68 0.701104
Target:  5'- cGCucCGCGGGCugCACCGcGCUgacgccUGUCGa -3'
miRNA:   3'- -UGcuGCGCCUGugGUGGU-CGA------GCAGC- -5'
21219 3' -58.2 NC_004778.3 + 96481 0.68 0.671172
Target:  5'- uCGACGCGGccgcACAgCCACgCGGCggUGUCGu -3'
miRNA:   3'- uGCUGCGCC----UGU-GGUG-GUCGa-GCAGC- -5'
21219 3' -58.2 NC_004778.3 + 84353 0.69 0.655079
Target:  5'- uCGGCGUugaaaguccaGGACGCCGCuCGcgcgcugaugguagcGCUCGUCGg -3'
miRNA:   3'- uGCUGCG----------CCUGUGGUG-GU---------------CGAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 34601 0.69 0.64096
Target:  5'- uGCGGCGCGcaAC-CCACCGGCaCGUUGc -3'
miRNA:   3'- -UGCUGCGCc-UGuGGUGGUCGaGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 110945 0.69 0.630865
Target:  5'- -gGAgGCGGGCGCCACCccauuuuuaaaAGuCUCGUUc -3'
miRNA:   3'- ugCUgCGCCUGUGGUGG-----------UC-GAGCAGc -5'
21219 3' -58.2 NC_004778.3 + 18344 0.69 0.630865
Target:  5'- --aACGCuGGACGCCAaCAGCUCGcgCGa -3'
miRNA:   3'- ugcUGCG-CCUGUGGUgGUCGAGCa-GC- -5'
21219 3' -58.2 NC_004778.3 + 69665 0.69 0.624808
Target:  5'- -aGGCGCuGGACGCCauucuuaacaaaaacACCAGCUCuUUGg -3'
miRNA:   3'- ugCUGCG-CCUGUGG---------------UGGUCGAGcAGC- -5'
21219 3' -58.2 NC_004778.3 + 94822 0.69 0.610686
Target:  5'- -gGAUGCGGucuuGCGCCugCAGUUCGaUCu -3'
miRNA:   3'- ugCUGCGCC----UGUGGugGUCGAGC-AGc -5'
21219 3' -58.2 NC_004778.3 + 108298 0.69 0.610686
Target:  5'- cACGGCGCucccGACGCCGCagAGCggcaCGUCGg -3'
miRNA:   3'- -UGCUGCGc---CUGUGGUGg-UCGa---GCAGC- -5'
21219 3' -58.2 NC_004778.3 + 127741 0.69 0.610686
Target:  5'- uACGAUGuCGGGCAUgCGCCuGCUCG-CGc -3'
miRNA:   3'- -UGCUGC-GCCUGUG-GUGGuCGAGCaGC- -5'
21219 3' -58.2 NC_004778.3 + 106355 0.69 0.609678
Target:  5'- -gGACGCgcuggaaaaaauuGGACACCaaaacgACCuGCUCGUCa -3'
miRNA:   3'- ugCUGCG-------------CCUGUGG------UGGuCGAGCAGc -5'
21219 3' -58.2 NC_004778.3 + 82671 0.69 0.607663
Target:  5'- uUGGCGCGGGCgccaaGCCGCCAaacacgguuuggacGgUCGUCGc -3'
miRNA:   3'- uGCUGCGCCUG-----UGGUGGU--------------CgAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 114366 0.69 0.606656
Target:  5'- cGCGcCGCGGGCgaggccgGCCcuugcguagcaacgGCCGGCUUGUCa -3'
miRNA:   3'- -UGCuGCGCCUG-------UGG--------------UGGUCGAGCAGc -5'
21219 3' -58.2 NC_004778.3 + 16286 0.7 0.590569
Target:  5'- uACGACGCGGuuguaaACgUGCCGGCaggCGUCGg -3'
miRNA:   3'- -UGCUGCGCCug----UG-GUGGUCGa--GCAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.