miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21219 5' -53.3 NC_004778.3 + 309 0.66 0.948775
Target:  5'- cCCACCuGAGcgcguGCUGGCGcaagaauuugUAGCAGCGGu -3'
miRNA:   3'- aGGUGG-CUU-----UGACUGCu---------GUCGUCGCU- -5'
21219 5' -53.3 NC_004778.3 + 1266 0.66 0.956993
Target:  5'- gCUugUGGg---GACGACGGCGGCGu -3'
miRNA:   3'- aGGugGCUuugaCUGCUGUCGUCGCu -5'
21219 5' -53.3 NC_004778.3 + 5053 0.73 0.643612
Target:  5'- gUCGCCGcgcGACUGGCGGCGugguauaaccGCGGCGAc -3'
miRNA:   3'- aGGUGGCu--UUGACUGCUGU----------CGUCGCU- -5'
21219 5' -53.3 NC_004778.3 + 14359 0.66 0.953005
Target:  5'- aUCGCUGAcgAAgUGGUGACAGCAGCc- -3'
miRNA:   3'- aGGUGGCU--UUgACUGCUGUCGUCGcu -5'
21219 5' -53.3 NC_004778.3 + 17096 0.67 0.929378
Target:  5'- gUCGgCGAGGCUG-CGACAGCA-UGAg -3'
miRNA:   3'- aGGUgGCUUUGACuGCUGUCGUcGCU- -5'
21219 5' -53.3 NC_004778.3 + 23135 0.7 0.794892
Target:  5'- --aACCGggGCUGG-GGCuGCGGCGGg -3'
miRNA:   3'- aggUGGCuuUGACUgCUGuCGUCGCU- -5'
21219 5' -53.3 NC_004778.3 + 26731 0.68 0.899477
Target:  5'- aCCGCCGcAAACgccGCGGCcuGCAGCGc -3'
miRNA:   3'- aGGUGGC-UUUGac-UGCUGu-CGUCGCu -5'
21219 5' -53.3 NC_004778.3 + 28010 0.71 0.756594
Target:  5'- aCCugCGAGcaacGCaUGGCGcucaACGGCGGCGAg -3'
miRNA:   3'- aGGugGCUU----UG-ACUGC----UGUCGUCGCU- -5'
21219 5' -53.3 NC_004778.3 + 30513 0.69 0.870394
Target:  5'- gCCAUCGAGAaUGACGACccGGCgcguccguacgugGGCGAg -3'
miRNA:   3'- aGGUGGCUUUgACUGCUG--UCG-------------UCGCU- -5'
21219 5' -53.3 NC_004778.3 + 30743 0.7 0.804103
Target:  5'- gCCAUCGAAaguucgcgucGCUGACGACGaCGuGCGAa -3'
miRNA:   3'- aGGUGGCUU----------UGACUGCUGUcGU-CGCU- -5'
21219 5' -53.3 NC_004778.3 + 31368 0.69 0.855608
Target:  5'- aCCACgCGAuguACgccaucauCGACGGCAGCGGu -3'
miRNA:   3'- aGGUG-GCUu--UGacu-----GCUGUCGUCGCU- -5'
21219 5' -53.3 NC_004778.3 + 36423 0.67 0.91817
Target:  5'- aUCCugCGuuggGGCUGcugcgcguucacGCGGcCGGCGGCGAc -3'
miRNA:   3'- -AGGugGCu---UUGAC------------UGCU-GUCGUCGCU- -5'
21219 5' -53.3 NC_004778.3 + 38634 0.67 0.929378
Target:  5'- uUCCAUUGugGCUG-CgGGCAGUAGCGu -3'
miRNA:   3'- -AGGUGGCuuUGACuG-CUGUCGUCGCu -5'
21219 5' -53.3 NC_004778.3 + 39597 0.68 0.90532
Target:  5'- aUCaCGCCGucGCUGACcgccacgGACAGUccGGCGGg -3'
miRNA:   3'- -AG-GUGGCuuUGACUG-------CUGUCG--UCGCU- -5'
21219 5' -53.3 NC_004778.3 + 44083 0.66 0.964262
Target:  5'- gUCAUgGAcGCgGGCGuuuGCGGCGGCGAu -3'
miRNA:   3'- aGGUGgCUuUGaCUGC---UGUCGUCGCU- -5'
21219 5' -53.3 NC_004778.3 + 46231 0.66 0.953005
Target:  5'- gCCGCUGAAAUguugcacaacaUGAacggcgcacaGACGGCAGCGu -3'
miRNA:   3'- aGGUGGCUUUG-----------ACUg---------CUGUCGUCGCu -5'
21219 5' -53.3 NC_004778.3 + 47924 0.76 0.479511
Target:  5'- gUUCACCGAcAUgGugGACAGCGGCGc -3'
miRNA:   3'- -AGGUGGCUuUGaCugCUGUCGUCGCu -5'
21219 5' -53.3 NC_004778.3 + 57219 0.68 0.899477
Target:  5'- gCCGaCGGAGCUGugGACucgaccGGCcGCGAa -3'
miRNA:   3'- aGGUgGCUUUGACugCUG------UCGuCGCU- -5'
21219 5' -53.3 NC_004778.3 + 60980 0.75 0.570272
Target:  5'- -aCGCCGGcGGCggcGGCGGCGGCGGCGGc -3'
miRNA:   3'- agGUGGCU-UUGa--CUGCUGUCGUCGCU- -5'
21219 5' -53.3 NC_004778.3 + 68055 0.68 0.912188
Target:  5'- uUCCGCUcAAACUGGCGcuCAGCGaCGAc -3'
miRNA:   3'- -AGGUGGcUUUGACUGCu-GUCGUcGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.