miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21219 5' -53.3 NC_004778.3 + 116758 0.68 0.905956
Target:  5'- gCCGCCGGucggcuGACUGGCGACGuGUAcGCu- -3'
miRNA:   3'- aGGUGGCU------UUGACUGCUGU-CGU-CGcu -5'
21219 5' -53.3 NC_004778.3 + 39597 0.68 0.90532
Target:  5'- aUCaCGCCGucGCUGACcgccacgGACAGUccGGCGGg -3'
miRNA:   3'- -AG-GUGGCuuUGACUG-------CUGUCG--UCGCU- -5'
21219 5' -53.3 NC_004778.3 + 121149 0.68 0.899477
Target:  5'- aCUAU--AAGCUGGCGugGGCAGCa- -3'
miRNA:   3'- aGGUGgcUUUGACUGCugUCGUCGcu -5'
21219 5' -53.3 NC_004778.3 + 26731 0.68 0.899477
Target:  5'- aCCGCCGcAAACgccGCGGCcuGCAGCGc -3'
miRNA:   3'- aGGUGGC-UUUGac-UGCUGu-CGUCGCu -5'
21219 5' -53.3 NC_004778.3 + 57219 0.68 0.899477
Target:  5'- gCCGaCGGAGCUGugGACucgaccGGCcGCGAa -3'
miRNA:   3'- aGGUgGCUUUGACugCUG------UCGuCGCU- -5'
21219 5' -53.3 NC_004778.3 + 30513 0.69 0.870394
Target:  5'- gCCAUCGAGAaUGACGACccGGCgcguccguacgugGGCGAg -3'
miRNA:   3'- aGGUGGCUUUgACUGCUG--UCG-------------UCGCU- -5'
21219 5' -53.3 NC_004778.3 + 31368 0.69 0.855608
Target:  5'- aCCACgCGAuguACgccaucauCGACGGCAGCGGu -3'
miRNA:   3'- aGGUG-GCUu--UGacu-----GCUGUCGUCGCU- -5'
21219 5' -53.3 NC_004778.3 + 30743 0.7 0.804103
Target:  5'- gCCAUCGAAaguucgcgucGCUGACGACGaCGuGCGAa -3'
miRNA:   3'- aGGUGGCUU----------UGACUGCUGUcGU-CGCU- -5'
21219 5' -53.3 NC_004778.3 + 97688 0.7 0.794892
Target:  5'- cCCGuuGGAGCUGGCGACGcGCcGCu- -3'
miRNA:   3'- aGGUggCUUUGACUGCUGU-CGuCGcu -5'
21219 5' -53.3 NC_004778.3 + 23135 0.7 0.794892
Target:  5'- --aACCGggGCUGG-GGCuGCGGCGGg -3'
miRNA:   3'- aggUGGCuuUGACUgCUGuCGUCGCU- -5'
21219 5' -53.3 NC_004778.3 + 87698 0.71 0.766367
Target:  5'- aCCAaCGAaaucaAACUGACGAcCAGCAGCc- -3'
miRNA:   3'- aGGUgGCU-----UUGACUGCU-GUCGUCGcu -5'
21219 5' -53.3 NC_004778.3 + 28010 0.71 0.756594
Target:  5'- aCCugCGAGcaacGCaUGGCGcucaACGGCGGCGAg -3'
miRNA:   3'- aGGugGCUU----UG-ACUGC----UGUCGUCGCU- -5'
21219 5' -53.3 NC_004778.3 + 89831 0.72 0.736709
Target:  5'- cCCGCCG-GACUGuccgUGGCGGuCAGCGAc -3'
miRNA:   3'- aGGUGGCuUUGACu---GCUGUC-GUCGCU- -5'
21219 5' -53.3 NC_004778.3 + 83968 0.72 0.695865
Target:  5'- gUCCGCgCGAGuuGCccGACcGCGGCAGCGAg -3'
miRNA:   3'- -AGGUG-GCUU--UGa-CUGcUGUCGUCGCU- -5'
21219 5' -53.3 NC_004778.3 + 96973 0.73 0.654118
Target:  5'- aCCGCUGguGCaaaGGCGACAcGCAGCGGc -3'
miRNA:   3'- aGGUGGCuuUGa--CUGCUGU-CGUCGCU- -5'
21219 5' -53.3 NC_004778.3 + 5053 0.73 0.643612
Target:  5'- gUCGCCGcgcGACUGGCGGCGugguauaaccGCGGCGAc -3'
miRNA:   3'- aGGUGGCu--UUGACUGCUGU----------CGUCGCU- -5'
21219 5' -53.3 NC_004778.3 + 60980 0.75 0.570272
Target:  5'- -aCGCCGGcGGCggcGGCGGCGGCGGCGGc -3'
miRNA:   3'- agGUGGCU-UUGa--CUGCUGUCGUCGCU- -5'
21219 5' -53.3 NC_004778.3 + 47924 0.76 0.479511
Target:  5'- gUUCACCGAcAUgGugGACAGCGGCGc -3'
miRNA:   3'- -AGGUGGCUuUGaCugCUGUCGUCGCu -5'
21219 5' -53.3 NC_004778.3 + 83705 1.1 0.004017
Target:  5'- gUCCACCGAAACUGACGACAGCAGCGAu -3'
miRNA:   3'- -AGGUGGCUUUGACUGCUGUCGUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.