miRNA display CGI


Results 21 - 40 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21220 3' -52 NC_004778.3 + 55292 0.66 0.978421
Target:  5'- aGCACGuUCGUGaCCGAgcaaaaaaugcaagaAAUGaucgggcACGCCGCg -3'
miRNA:   3'- -UGUGC-AGCGCgGGUU---------------UUAU-------UGCGGCG- -5'
21220 3' -52 NC_004778.3 + 9053 0.66 0.977698
Target:  5'- aAC-CGcCGCGCUCGA----GCGCCGg -3'
miRNA:   3'- -UGuGCaGCGCGGGUUuuauUGCGGCg -5'
21220 3' -52 NC_004778.3 + 104216 0.66 0.977698
Target:  5'- -gGC-UCGCGaucaUCAAAAaugGGCGCCGCa -3'
miRNA:   3'- ugUGcAGCGCg---GGUUUUa--UUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 101767 0.66 0.977698
Target:  5'- cGCuCGUCGUGCCCGAA---GCGUa-- -3'
miRNA:   3'- -UGuGCAGCGCGGGUUUuauUGCGgcg -5'
21220 3' -52 NC_004778.3 + 38270 0.66 0.977698
Target:  5'- aACGCGa-GCGCCCGAcg-GAgGUCGUc -3'
miRNA:   3'- -UGUGCagCGCGGGUUuuaUUgCGGCG- -5'
21220 3' -52 NC_004778.3 + 121710 0.66 0.977698
Target:  5'- cCGCGUCGgGCaCGuuGUcggcGCGCCGUa -3'
miRNA:   3'- uGUGCAGCgCGgGUuuUAu---UGCGGCG- -5'
21220 3' -52 NC_004778.3 + 72583 0.66 0.975157
Target:  5'- aGCGCGUuuuauuugCGCGUCCGuGAauGCGCCa- -3'
miRNA:   3'- -UGUGCA--------GCGCGGGUuUUauUGCGGcg -5'
21220 3' -52 NC_004778.3 + 25703 0.66 0.975157
Target:  5'- cGC-CGUCGCGCaCGAGGcAAUGCacaGCg -3'
miRNA:   3'- -UGuGCAGCGCGgGUUUUaUUGCGg--CG- -5'
21220 3' -52 NC_004778.3 + 58422 0.66 0.975157
Target:  5'- -aACG-CGCGUCCAAAAccuuuuGCGCCcuGCu -3'
miRNA:   3'- ugUGCaGCGCGGGUUUUau----UGCGG--CG- -5'
21220 3' -52 NC_004778.3 + 122570 0.66 0.975157
Target:  5'- uCugGaCGCGCUCGAuucaaaGAUcaacGCGCCGCc -3'
miRNA:   3'- uGugCaGCGCGGGUU------UUAu---UGCGGCG- -5'
21220 3' -52 NC_004778.3 + 38878 0.66 0.975157
Target:  5'- -gGCGcUGCGCUCGgcGGcgAGCGCUGCc -3'
miRNA:   3'- ugUGCaGCGCGGGU--UUuaUUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 21094 0.66 0.975157
Target:  5'- aGCGCGgUGCaGCCCGcggAGcgGACGuuGCc -3'
miRNA:   3'- -UGUGCaGCG-CGGGU---UUuaUUGCggCG- -5'
21220 3' -52 NC_004778.3 + 69143 0.66 0.975157
Target:  5'- aACACGUCGaCGCCguuuaAAGAcuucCGCCGg -3'
miRNA:   3'- -UGUGCAGC-GCGGg----UUUUauu-GCGGCg -5'
21220 3' -52 NC_004778.3 + 124884 0.66 0.975157
Target:  5'- aACGCGgcacagCGCGCUg-----GGCGCCGUg -3'
miRNA:   3'- -UGUGCa-----GCGCGGguuuuaUUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 97700 0.66 0.975157
Target:  5'- -gGCGaCGCGCCgCuuaaacuccauAAAgcGCGCCGCg -3'
miRNA:   3'- ugUGCaGCGCGG-Gu----------UUUauUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 85460 0.66 0.975157
Target:  5'- cGCGCGUUgggcgGCGCgCCAAAGUAAuccauaauCGCgGUg -3'
miRNA:   3'- -UGUGCAG-----CGCG-GGUUUUAUU--------GCGgCG- -5'
21220 3' -52 NC_004778.3 + 112192 0.66 0.975157
Target:  5'- uGCAcuuCGUUcucgGCGCCCucgcgcAUAGCGgCCGCg -3'
miRNA:   3'- -UGU---GCAG----CGCGGGuuu---UAUUGC-GGCG- -5'
21220 3' -52 NC_004778.3 + 45703 0.66 0.974892
Target:  5'- aACGCGUccacgggggccacCGCGCCUAAGcuuuUAAUGCCc- -3'
miRNA:   3'- -UGUGCA-------------GCGCGGGUUUu---AUUGCGGcg -5'
21220 3' -52 NC_004778.3 + 27537 0.66 0.972412
Target:  5'- gACACGUUGCGCUUGGAcugGGCuaCCGUg -3'
miRNA:   3'- -UGUGCAGCGCGGGUUUua-UUGc-GGCG- -5'
21220 3' -52 NC_004778.3 + 91336 0.66 0.972412
Target:  5'- cACACGUcaaCGCGUCUguGGaGACGCUGUu -3'
miRNA:   3'- -UGUGCA---GCGCGGGuuUUaUUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.