miRNA display CGI


Results 1 - 20 of 178 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21221 3' -56.1 NC_004778.3 + 67790 0.66 0.881039
Target:  5'- cCCAGCAuGCG-CGCGGCgUugGcgCGCg -3'
miRNA:   3'- uGGUCGU-CGUgGCGCUG-GugUuaGCG- -5'
21221 3' -56.1 NC_004778.3 + 14216 0.66 0.881039
Target:  5'- cGCCAGCAcuuugACCGaauccugccCGGCCaaaGCGAUCGCa -3'
miRNA:   3'- -UGGUCGUcg---UGGC---------GCUGG---UGUUAGCG- -5'
21221 3' -56.1 NC_004778.3 + 5125 0.66 0.881039
Target:  5'- cGCCGGaAGaCGCCGUGcCCACGccggCGCc -3'
miRNA:   3'- -UGGUCgUC-GUGGCGCuGGUGUua--GCG- -5'
21221 3' -56.1 NC_004778.3 + 11624 0.66 0.881039
Target:  5'- ----aCGGCGCCGCGGuCCACGAUUa- -3'
miRNA:   3'- uggucGUCGUGGCGCU-GGUGUUAGcg -5'
21221 3' -56.1 NC_004778.3 + 38986 0.66 0.881039
Target:  5'- -aCGGCGGCGCCGUagcaagccaGGCCgACAAcaaGCa -3'
miRNA:   3'- ugGUCGUCGUGGCG---------CUGG-UGUUag-CG- -5'
21221 3' -56.1 NC_004778.3 + 98539 0.66 0.881039
Target:  5'- aACCAGCaccGGCACUucuuGCGACgGCccGUCGg -3'
miRNA:   3'- -UGGUCG---UCGUGG----CGCUGgUGu-UAGCg -5'
21221 3' -56.1 NC_004778.3 + 76798 0.66 0.880324
Target:  5'- aAUCAGCuacaagaGGCGuuCCGCGACUAU--UCGCc -3'
miRNA:   3'- -UGGUCG-------UCGU--GGCGCUGGUGuuAGCG- -5'
21221 3' -56.1 NC_004778.3 + 30766 0.66 0.880324
Target:  5'- cGCCaauuuuuguGGguGCGCCGCGAcaacaacCCGgAAUUGUa -3'
miRNA:   3'- -UGG---------UCguCGUGGCGCU-------GGUgUUAGCG- -5'
21221 3' -56.1 NC_004778.3 + 1688 0.66 0.878887
Target:  5'- gGCCAGCAGCGCgagcagGCGcauGCCcgacaugcguauaaACAGUcCGCg -3'
miRNA:   3'- -UGGUCGUCGUGg-----CGC---UGG--------------UGUUA-GCG- -5'
21221 3' -56.1 NC_004778.3 + 84522 0.66 0.873788
Target:  5'- -aCAGCAGCGCCGUuuauagucaacuGugCAUuAUUGUa -3'
miRNA:   3'- ugGUCGUCGUGGCG------------CugGUGuUAGCG- -5'
21221 3' -56.1 NC_004778.3 + 38947 0.66 0.873788
Target:  5'- gAUCGGCGuggucGcCGCCGCGcACCACGuacUUGCg -3'
miRNA:   3'- -UGGUCGU-----C-GUGGCGC-UGGUGUu--AGCG- -5'
21221 3' -56.1 NC_004778.3 + 95977 0.66 0.873788
Target:  5'- gGCgAGCA-CGCCGCcgugcggacGGCCGCGcuuuUCGCg -3'
miRNA:   3'- -UGgUCGUcGUGGCG---------CUGGUGUu---AGCG- -5'
21221 3' -56.1 NC_004778.3 + 100224 0.66 0.873788
Target:  5'- cGCCuGCuuuuucuGCgacuGCCGCGugCGCGAUUGg -3'
miRNA:   3'- -UGGuCGu------CG----UGGCGCugGUGUUAGCg -5'
21221 3' -56.1 NC_004778.3 + 120091 0.66 0.873051
Target:  5'- aACCAuaGGUACgCGCGACUcCAgugcuucGUCGCu -3'
miRNA:   3'- -UGGUcgUCGUG-GCGCUGGuGU-------UAGCG- -5'
21221 3' -56.1 NC_004778.3 + 30914 0.66 0.866316
Target:  5'- uGCCGGUgcuGguUUGCGGCCGCAugAUgGCg -3'
miRNA:   3'- -UGGUCGu--CguGGCGCUGGUGU--UAgCG- -5'
21221 3' -56.1 NC_004778.3 + 61480 0.66 0.866316
Target:  5'- gGCCAacaaauacuGguGCaaaaACCGCGGCUGCGcuuugaugaGUCGCa -3'
miRNA:   3'- -UGGU---------CguCG----UGGCGCUGGUGU---------UAGCG- -5'
21221 3' -56.1 NC_004778.3 + 7685 0.66 0.866316
Target:  5'- uCCAG-GGCAUCaGCGACCcGCAaaucggGUCGCu -3'
miRNA:   3'- uGGUCgUCGUGG-CGCUGG-UGU------UAGCG- -5'
21221 3' -56.1 NC_004778.3 + 32650 0.66 0.866316
Target:  5'- -gCAGCGGUugaauagguucAUUGCGACCACcGUgCGCu -3'
miRNA:   3'- ugGUCGUCG-----------UGGCGCUGGUGuUA-GCG- -5'
21221 3' -56.1 NC_004778.3 + 112102 0.66 0.866316
Target:  5'- aGCUAGC-GCcCCGCGcACCACAcccaCGUa -3'
miRNA:   3'- -UGGUCGuCGuGGCGC-UGGUGUua--GCG- -5'
21221 3' -56.1 NC_004778.3 + 13546 0.66 0.866316
Target:  5'- uCCAGCAaaACCGCGuACCG--AUCGUu -3'
miRNA:   3'- uGGUCGUcgUGGCGC-UGGUguUAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.