miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21221 5' -58.3 NC_004778.3 + 82616 0.66 0.815794
Target:  5'- aGGCGGCGaGCCGccgcgcgauaGCGUCGC-AUGu -3'
miRNA:   3'- gCCGUUGC-CGGCcag-------CGCAGCGaUAC- -5'
21221 5' -58.3 NC_004778.3 + 8017 0.66 0.800113
Target:  5'- gCGGCGacACGGCCGa-CGCGUgccUGCUGc- -3'
miRNA:   3'- -GCCGU--UGCCGGCcaGCGCA---GCGAUac -5'
21221 5' -58.3 NC_004778.3 + 99023 0.66 0.79119
Target:  5'- -cGCAACGcCCGGcaaCGCGUCGCg--- -3'
miRNA:   3'- gcCGUUGCcGGCCa--GCGCAGCGauac -5'
21221 5' -58.3 NC_004778.3 + 121424 0.66 0.79119
Target:  5'- aGGC-ACGcGUCGGcCGUGUCGCc--- -3'
miRNA:   3'- gCCGuUGC-CGGCCaGCGCAGCGauac -5'
21221 5' -58.3 NC_004778.3 + 113979 0.66 0.782127
Target:  5'- gCGGCAGCacuuuGGCgUGGUCGCGcggaggcggCGCUGc- -3'
miRNA:   3'- -GCCGUUG-----CCG-GCCAGCGCa--------GCGAUac -5'
21221 5' -58.3 NC_004778.3 + 110126 0.66 0.773858
Target:  5'- gGGCAcCGGCCGGUC-CGUauacggcacagugcaGCUGc- -3'
miRNA:   3'- gCCGUuGCCGGCCAGcGCAg--------------CGAUac -5'
21221 5' -58.3 NC_004778.3 + 90271 0.67 0.763616
Target:  5'- gGGCGACGcGgUGGUCGUG-CGCa--- -3'
miRNA:   3'- gCCGUUGC-CgGCCAGCGCaGCGauac -5'
21221 5' -58.3 NC_004778.3 + 112320 0.67 0.762677
Target:  5'- uGGCAACGGCguugccaCGGUaggCGCGcCGCg--- -3'
miRNA:   3'- gCCGUUGCCG-------GCCA---GCGCaGCGauac -5'
21221 5' -58.3 NC_004778.3 + 61365 0.67 0.744648
Target:  5'- gCGGaCGGC-GCCGGcgCGuCGUCGCUGa- -3'
miRNA:   3'- -GCC-GUUGcCGGCCa-GC-GCAGCGAUac -5'
21221 5' -58.3 NC_004778.3 + 114263 0.67 0.735016
Target:  5'- -aGUAACGgacaGCCGGUCGCGUUGUc--- -3'
miRNA:   3'- gcCGUUGC----CGGCCAGCGCAGCGauac -5'
21221 5' -58.3 NC_004778.3 + 90840 0.67 0.725296
Target:  5'- -uGCGACGGCCGG-CGCuUUGCg--- -3'
miRNA:   3'- gcCGUUGCCGGCCaGCGcAGCGauac -5'
21221 5' -58.3 NC_004778.3 + 44135 0.67 0.725296
Target:  5'- gCGGCGACGGCaUGGaCGCGggCGUUu-- -3'
miRNA:   3'- -GCCGUUGCCG-GCCaGCGCa-GCGAuac -5'
21221 5' -58.3 NC_004778.3 + 83531 0.68 0.70563
Target:  5'- cCGGCGgaacAUGGCUcGUCGCGcgugUCGUUGUGc -3'
miRNA:   3'- -GCCGU----UGCCGGcCAGCGC----AGCGAUAC- -5'
21221 5' -58.3 NC_004778.3 + 76417 0.68 0.70563
Target:  5'- nGGCGGCGGUugcuguggCGG-CG-GUUGCUGUGg -3'
miRNA:   3'- gCCGUUGCCG--------GCCaGCgCAGCGAUAC- -5'
21221 5' -58.3 NC_004778.3 + 90936 0.68 0.70563
Target:  5'- aGGCAugGacGCCGaaCGCGUCGCg--- -3'
miRNA:   3'- gCCGUugC--CGGCcaGCGCAGCGauac -5'
21221 5' -58.3 NC_004778.3 + 30648 0.68 0.695701
Target:  5'- gCGGgGuCGGaCCGcguguuGUCGCGUCGCUGg- -3'
miRNA:   3'- -GCCgUuGCC-GGC------CAGCGCAGCGAUac -5'
21221 5' -58.3 NC_004778.3 + 33657 0.68 0.685721
Target:  5'- aGGCGcagcGCGGCCGG-CGCGcugccgCGCg--- -3'
miRNA:   3'- gCCGU----UGCCGGCCaGCGCa-----GCGauac -5'
21221 5' -58.3 NC_004778.3 + 52055 0.68 0.685721
Target:  5'- -aGCGacGCGGCCGG-CGCGUgCGCa--- -3'
miRNA:   3'- gcCGU--UGCCGGCCaGCGCA-GCGauac -5'
21221 5' -58.3 NC_004778.3 + 65152 0.68 0.685721
Target:  5'- gGGUAGCGGCCGGguggaCG-GcCGCUAc- -3'
miRNA:   3'- gCCGUUGCCGGCCa----GCgCaGCGAUac -5'
21221 5' -58.3 NC_004778.3 + 46345 0.68 0.675697
Target:  5'- gCGGC-GCGcaaGCUGGUCGaGUCGCUAc- -3'
miRNA:   3'- -GCCGuUGC---CGGCCAGCgCAGCGAUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.