miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21222 3' -54.9 NC_004778.3 + 61626 0.66 0.929722
Target:  5'- aGCGUuuGGcGCCGCGc--AGCcAGCgCGCg -3'
miRNA:   3'- gCGCA--CC-CGGCGCuuuUCGaUUG-GCG- -5'
21222 3' -54.9 NC_004778.3 + 27696 0.66 0.929722
Target:  5'- aGCGUGGccaguGCCGCGuuc-GCccuGCUGCu -3'
miRNA:   3'- gCGCACC-----CGGCGCuuuuCGau-UGGCG- -5'
21222 3' -54.9 NC_004778.3 + 64600 0.66 0.929722
Target:  5'- gCGCaGUGcGCCGaCGGGcAAGUUuucGACCGCg -3'
miRNA:   3'- -GCG-CACcCGGC-GCUU-UUCGA---UUGGCG- -5'
21222 3' -54.9 NC_004778.3 + 82888 0.66 0.929722
Target:  5'- uCGCGgcgggGGGaCCGUuuGAAcGCguuGCCGCa -3'
miRNA:   3'- -GCGCa----CCC-GGCGcuUUU-CGau-UGGCG- -5'
21222 3' -54.9 NC_004778.3 + 98872 0.66 0.929722
Target:  5'- aCGC-UGcGGCCGCGGccGGCU-GCCa- -3'
miRNA:   3'- -GCGcAC-CCGGCGCUuuUCGAuUGGcg -5'
21222 3' -54.9 NC_004778.3 + 96571 0.66 0.924885
Target:  5'- gGUG-GGGCCaGCGGGucguggagcacccuGCUAGCCaGCg -3'
miRNA:   3'- gCGCaCCCGG-CGCUUuu------------CGAUUGG-CG- -5'
21222 3' -54.9 NC_004778.3 + 100884 0.66 0.924336
Target:  5'- aGCuu-GGCCGCcAuuAGCUGACCGa -3'
miRNA:   3'- gCGcacCCGGCGcUuuUCGAUUGGCg -5'
21222 3' -54.9 NC_004778.3 + 49468 0.66 0.924336
Target:  5'- uGUGcGGcGCCGCGuccaa-UGACCGCg -3'
miRNA:   3'- gCGCaCC-CGGCGCuuuucgAUUGGCG- -5'
21222 3' -54.9 NC_004778.3 + 121710 0.66 0.918704
Target:  5'- cCGCGUcGGGCaCGUuGucGGCgcGCCGUa -3'
miRNA:   3'- -GCGCA-CCCG-GCGcUuuUCGauUGGCG- -5'
21222 3' -54.9 NC_004778.3 + 93400 0.66 0.912828
Target:  5'- uCGUGcacGGaGCCGacgccggugGAAAAGCUAAUCGCc -3'
miRNA:   3'- -GCGCa--CC-CGGCg--------CUUUUCGAUUGGCG- -5'
21222 3' -54.9 NC_004778.3 + 25657 0.66 0.912828
Target:  5'- gCGCGgGGGCCGgCGGcguguGGGUcAACgGCa -3'
miRNA:   3'- -GCGCaCCCGGC-GCUu----UUCGaUUGgCG- -5'
21222 3' -54.9 NC_004778.3 + 107894 0.66 0.912828
Target:  5'- -aCGUGGGCUgcgccguuGCGGAAAcgguGCUgGACUGCg -3'
miRNA:   3'- gcGCACCCGG--------CGCUUUU----CGA-UUGGCG- -5'
21222 3' -54.9 NC_004778.3 + 33601 0.66 0.912828
Target:  5'- uGCGgacGGCCGCGcuuuucGCgccGCCGCa -3'
miRNA:   3'- gCGCac-CCGGCGCuuuu--CGau-UGGCG- -5'
21222 3' -54.9 NC_004778.3 + 91847 0.66 0.909185
Target:  5'- uCGCGUggucggcaauuacaaGGGCUacgcaaaCGAuuacAAGCUGGCCGCu -3'
miRNA:   3'- -GCGCA---------------CCCGGc------GCUu---UUCGAUUGGCG- -5'
21222 3' -54.9 NC_004778.3 + 33006 0.67 0.900346
Target:  5'- cCGCGUGcgcaucGCCGCGuuccAGCacccuuGCCGCg -3'
miRNA:   3'- -GCGCACc-----CGGCGCuuu-UCGau----UGGCG- -5'
21222 3' -54.9 NC_004778.3 + 121428 0.67 0.897734
Target:  5'- aCGCGUcGGCCGUGucgccgccgucGGC--GCCGCg -3'
miRNA:   3'- -GCGCAcCCGGCGCuuu--------UCGauUGGCG- -5'
21222 3' -54.9 NC_004778.3 + 94945 0.67 0.893746
Target:  5'- uGCGUcacgagcccGGGCCGC---AGGC-AACUGCa -3'
miRNA:   3'- gCGCA---------CCCGGCGcuuUUCGaUUGGCG- -5'
21222 3' -54.9 NC_004778.3 + 75143 0.67 0.893746
Target:  5'- -aCGUuGGCCGcCGggGcgGGCUcacuGGCCGCa -3'
miRNA:   3'- gcGCAcCCGGC-GCuuU--UCGA----UUGGCG- -5'
21222 3' -54.9 NC_004778.3 + 102190 0.67 0.88691
Target:  5'- uGUGgacgcGGGCUGUGAcgGAGGCcuGCUGCa -3'
miRNA:   3'- gCGCa----CCCGGCGCU--UUUCGauUGGCG- -5'
21222 3' -54.9 NC_004778.3 + 82422 0.67 0.88691
Target:  5'- aCG-GUGGGCCGCGAcAAAcGCaccaCGCu -3'
miRNA:   3'- -GCgCACCCGGCGCU-UUU-CGauugGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.