Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21222 | 3' | -54.9 | NC_004778.3 | + | 27696 | 0.66 | 0.929722 |
Target: 5'- aGCGUGGccaguGCCGCGuuc-GCccuGCUGCu -3' miRNA: 3'- gCGCACC-----CGGCGCuuuuCGau-UGGCG- -5' |
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21222 | 3' | -54.9 | NC_004778.3 | + | 61626 | 0.66 | 0.929722 |
Target: 5'- aGCGUuuGGcGCCGCGc--AGCcAGCgCGCg -3' miRNA: 3'- gCGCA--CC-CGGCGCuuuUCGaUUG-GCG- -5' |
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21222 | 3' | -54.9 | NC_004778.3 | + | 64600 | 0.66 | 0.929722 |
Target: 5'- gCGCaGUGcGCCGaCGGGcAAGUUuucGACCGCg -3' miRNA: 3'- -GCG-CACcCGGC-GCUU-UUCGA---UUGGCG- -5' |
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21222 | 3' | -54.9 | NC_004778.3 | + | 82888 | 0.66 | 0.929722 |
Target: 5'- uCGCGgcgggGGGaCCGUuuGAAcGCguuGCCGCa -3' miRNA: 3'- -GCGCa----CCC-GGCGcuUUU-CGau-UGGCG- -5' |
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21222 | 3' | -54.9 | NC_004778.3 | + | 98872 | 0.66 | 0.929722 |
Target: 5'- aCGC-UGcGGCCGCGGccGGCU-GCCa- -3' miRNA: 3'- -GCGcAC-CCGGCGCUuuUCGAuUGGcg -5' |
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21222 | 3' | -54.9 | NC_004778.3 | + | 96571 | 0.66 | 0.924885 |
Target: 5'- gGUG-GGGCCaGCGGGucguggagcacccuGCUAGCCaGCg -3' miRNA: 3'- gCGCaCCCGG-CGCUUuu------------CGAUUGG-CG- -5' |
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21222 | 3' | -54.9 | NC_004778.3 | + | 49468 | 0.66 | 0.924336 |
Target: 5'- uGUGcGGcGCCGCGuccaa-UGACCGCg -3' miRNA: 3'- gCGCaCC-CGGCGCuuuucgAUUGGCG- -5' |
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21222 | 3' | -54.9 | NC_004778.3 | + | 100884 | 0.66 | 0.924336 |
Target: 5'- aGCuu-GGCCGCcAuuAGCUGACCGa -3' miRNA: 3'- gCGcacCCGGCGcUuuUCGAUUGGCg -5' |
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21222 | 3' | -54.9 | NC_004778.3 | + | 121710 | 0.66 | 0.918704 |
Target: 5'- cCGCGUcGGGCaCGUuGucGGCgcGCCGUa -3' miRNA: 3'- -GCGCA-CCCG-GCGcUuuUCGauUGGCG- -5' |
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21222 | 3' | -54.9 | NC_004778.3 | + | 33601 | 0.66 | 0.912828 |
Target: 5'- uGCGgacGGCCGCGcuuuucGCgccGCCGCa -3' miRNA: 3'- gCGCac-CCGGCGCuuuu--CGau-UGGCG- -5' |
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21222 | 3' | -54.9 | NC_004778.3 | + | 25657 | 0.66 | 0.912828 |
Target: 5'- gCGCGgGGGCCGgCGGcguguGGGUcAACgGCa -3' miRNA: 3'- -GCGCaCCCGGC-GCUu----UUCGaUUGgCG- -5' |
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21222 | 3' | -54.9 | NC_004778.3 | + | 107894 | 0.66 | 0.912828 |
Target: 5'- -aCGUGGGCUgcgccguuGCGGAAAcgguGCUgGACUGCg -3' miRNA: 3'- gcGCACCCGG--------CGCUUUU----CGA-UUGGCG- -5' |
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21222 | 3' | -54.9 | NC_004778.3 | + | 93400 | 0.66 | 0.912828 |
Target: 5'- uCGUGcacGGaGCCGacgccggugGAAAAGCUAAUCGCc -3' miRNA: 3'- -GCGCa--CC-CGGCg--------CUUUUCGAUUGGCG- -5' |
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21222 | 3' | -54.9 | NC_004778.3 | + | 91847 | 0.66 | 0.909185 |
Target: 5'- uCGCGUggucggcaauuacaaGGGCUacgcaaaCGAuuacAAGCUGGCCGCu -3' miRNA: 3'- -GCGCA---------------CCCGGc------GCUu---UUCGAUUGGCG- -5' |
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21222 | 3' | -54.9 | NC_004778.3 | + | 33006 | 0.67 | 0.900346 |
Target: 5'- cCGCGUGcgcaucGCCGCGuuccAGCacccuuGCCGCg -3' miRNA: 3'- -GCGCACc-----CGGCGCuuu-UCGau----UGGCG- -5' |
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21222 | 3' | -54.9 | NC_004778.3 | + | 121428 | 0.67 | 0.897734 |
Target: 5'- aCGCGUcGGCCGUGucgccgccgucGGC--GCCGCg -3' miRNA: 3'- -GCGCAcCCGGCGCuuu--------UCGauUGGCG- -5' |
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21222 | 3' | -54.9 | NC_004778.3 | + | 94945 | 0.67 | 0.893746 |
Target: 5'- uGCGUcacgagcccGGGCCGC---AGGC-AACUGCa -3' miRNA: 3'- gCGCA---------CCCGGCGcuuUUCGaUUGGCG- -5' |
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21222 | 3' | -54.9 | NC_004778.3 | + | 75143 | 0.67 | 0.893746 |
Target: 5'- -aCGUuGGCCGcCGggGcgGGCUcacuGGCCGCa -3' miRNA: 3'- gcGCAcCCGGC-GCuuU--UCGA----UUGGCG- -5' |
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21222 | 3' | -54.9 | NC_004778.3 | + | 102190 | 0.67 | 0.88691 |
Target: 5'- uGUGgacgcGGGCUGUGAcgGAGGCcuGCUGCa -3' miRNA: 3'- gCGCa----CCCGGCGCU--UUUCGauUGGCG- -5' |
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21222 | 3' | -54.9 | NC_004778.3 | + | 82422 | 0.67 | 0.88691 |
Target: 5'- aCG-GUGGGCCGCGAcAAAcGCaccaCGCu -3' miRNA: 3'- -GCgCACCCGGCGCU-UUU-CGauugGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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