miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21223 5' -52.9 NC_004778.3 + 112484 0.66 0.960278
Target:  5'- cGCGcCAGCgGCCGaugaacucgaGCCG-GUGCAUGUGc -3'
miRNA:   3'- aCGU-GUUG-CGGU----------UGGCuCACGUGUAC- -5'
21223 5' -52.9 NC_004778.3 + 34062 0.66 0.960278
Target:  5'- aGCACAGCGUgGAgUacGUGCACGUc -3'
miRNA:   3'- aCGUGUUGCGgUUgGcuCACGUGUAc -5'
21223 5' -52.9 NC_004778.3 + 33550 0.66 0.960278
Target:  5'- cGCACAagACGCUGAUCGuGUGUcCGUu -3'
miRNA:   3'- aCGUGU--UGCGGUUGGCuCACGuGUAc -5'
21223 5' -52.9 NC_004778.3 + 100806 0.66 0.960278
Target:  5'- aGCGCGACGCCGACac---GUACAa- -3'
miRNA:   3'- aCGUGUUGCGGUUGgcucaCGUGUac -5'
21223 5' -52.9 NC_004778.3 + 26777 0.66 0.960278
Target:  5'- uUGUACAGCGaCAGC---GUGCACGUGc -3'
miRNA:   3'- -ACGUGUUGCgGUUGgcuCACGUGUAC- -5'
21223 5' -52.9 NC_004778.3 + 73677 0.66 0.960278
Target:  5'- aGCuGCuGCGCC-GCCGAauUGCGCGUGu -3'
miRNA:   3'- aCG-UGuUGCGGuUGGCUc-ACGUGUAC- -5'
21223 5' -52.9 NC_004778.3 + 70489 0.66 0.960278
Target:  5'- gUGCGCuAUGUgGGCCGcGUGCaacuGCAUGu -3'
miRNA:   3'- -ACGUGuUGCGgUUGGCuCACG----UGUAC- -5'
21223 5' -52.9 NC_004778.3 + 57490 0.66 0.960278
Target:  5'- cGCGCGACggaaaaGCCGACauGGcGCGCGUGu -3'
miRNA:   3'- aCGUGUUG------CGGUUGgcUCaCGUGUAC- -5'
21223 5' -52.9 NC_004778.3 + 108389 0.66 0.959152
Target:  5'- uUGCACAaaACGCCGccgaccacgcuuuuGCCGcGGcGCAgGUGg -3'
miRNA:   3'- -ACGUGU--UGCGGU--------------UGGC-UCaCGUgUAC- -5'
21223 5' -52.9 NC_004778.3 + 61772 0.66 0.95644
Target:  5'- cUGCGCGGCGCCAAaCGcuUGCAguUa -3'
miRNA:   3'- -ACGUGUUGCGGUUgGCucACGUguAc -5'
21223 5' -52.9 NC_004778.3 + 90800 0.66 0.95644
Target:  5'- cGCGCuGACGUUGACgGcGUGCGCAa- -3'
miRNA:   3'- aCGUG-UUGCGGUUGgCuCACGUGUac -5'
21223 5' -52.9 NC_004778.3 + 10741 0.66 0.95644
Target:  5'- cGCGCucCGCgGgcuGCCGuGUGCGCGc- -3'
miRNA:   3'- aCGUGuuGCGgU---UGGCuCACGUGUac -5'
21223 5' -52.9 NC_004778.3 + 30749 0.66 0.95644
Target:  5'- aGCGCGaagccaaagcGCGCCAAUuuuugUGGGUGCGCc-- -3'
miRNA:   3'- aCGUGU----------UGCGGUUG-----GCUCACGUGuac -5'
21223 5' -52.9 NC_004778.3 + 33010 0.66 0.95402
Target:  5'- gUGCGCAuCGCCGcguuccagcacccuuGCCGcGUGCugGc- -3'
miRNA:   3'- -ACGUGUuGCGGU---------------UGGCuCACGugUac -5'
21223 5' -52.9 NC_004778.3 + 38605 0.66 0.952357
Target:  5'- cGCAaAGCGCCGGCCGuc-GCAaaaAUGg -3'
miRNA:   3'- aCGUgUUGCGGUUGGCucaCGUg--UAC- -5'
21223 5' -52.9 NC_004778.3 + 17192 0.66 0.951936
Target:  5'- cUGCACgGACGCCAAaaucuaCGAgacggcgGUGCGCGa- -3'
miRNA:   3'- -ACGUG-UUGCGGUUg-----GCU-------CACGUGUac -5'
21223 5' -52.9 NC_004778.3 + 114923 0.66 0.948025
Target:  5'- cGCuaaAGCGCaAGCCGGcGUGCGCAc- -3'
miRNA:   3'- aCGug-UUGCGgUUGGCU-CACGUGUac -5'
21223 5' -52.9 NC_004778.3 + 46752 0.66 0.948025
Target:  5'- cGgGCAGCgGCCAGCgCGuacGUGC-CAUGg -3'
miRNA:   3'- aCgUGUUG-CGGUUG-GCu--CACGuGUAC- -5'
21223 5' -52.9 NC_004778.3 + 11907 0.66 0.948025
Target:  5'- cGCGCAAcucCGCCugucGCCGcauguugagacGGUGCGCAc- -3'
miRNA:   3'- aCGUGUU---GCGGu---UGGC-----------UCACGUGUac -5'
21223 5' -52.9 NC_004778.3 + 29334 0.66 0.94344
Target:  5'- gGCGCGGCGCgcGCUGgGGUGCGCc-- -3'
miRNA:   3'- aCGUGUUGCGguUGGC-UCACGUGuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.