miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21224 3' -56.2 NC_004778.3 + 124085 0.66 0.881039
Target:  5'- -gCGCGCUGauGCGCGCgGUUGGcgGCCu -3'
miRNA:   3'- aaGUGCGGCgcCGUGUG-CAACU--UGGc -5'
21224 3' -56.2 NC_004778.3 + 16112 0.66 0.881039
Target:  5'- -cCGCGaCGUGGCuCGCGgccgGAACCa -3'
miRNA:   3'- aaGUGCgGCGCCGuGUGCaa--CUUGGc -5'
21224 3' -56.2 NC_004778.3 + 57423 0.66 0.881039
Target:  5'- uUUCGCGCaagauuaGCGGC--GCGUUGAGUCGc -3'
miRNA:   3'- -AAGUGCGg------CGCCGugUGCAACUUGGC- -5'
21224 3' -56.2 NC_004778.3 + 28124 0.66 0.873788
Target:  5'- gUUCGCGCUGCGaaGCGCACGccugcacGAgcGCCa -3'
miRNA:   3'- -AAGUGCGGCGC--CGUGUGCaa-----CU--UGGc -5'
21224 3' -56.2 NC_004778.3 + 42801 0.66 0.866316
Target:  5'- -gCACGCguugucgGCGGCGgACGUUGAcCUGa -3'
miRNA:   3'- aaGUGCGg------CGCCGUgUGCAACUuGGC- -5'
21224 3' -56.2 NC_004778.3 + 33094 0.66 0.866316
Target:  5'- -cCGCuGCCGCGcUACACGUacaUGAACUa -3'
miRNA:   3'- aaGUG-CGGCGCcGUGUGCA---ACUUGGc -5'
21224 3' -56.2 NC_004778.3 + 7528 0.66 0.866316
Target:  5'- --gGCGUacaaGCGGUACGCGgucGACCGg -3'
miRNA:   3'- aagUGCGg---CGCCGUGUGCaacUUGGC- -5'
21224 3' -56.2 NC_004778.3 + 108557 0.66 0.858627
Target:  5'- --uGCGCCGCGGCAaaaGCGUgg--UCGg -3'
miRNA:   3'- aagUGCGGCGCCGUg--UGCAacuuGGC- -5'
21224 3' -56.2 NC_004778.3 + 32296 0.66 0.858627
Target:  5'- ----gGCCGCGGCGCAUug-GAgcGCCGu -3'
miRNA:   3'- aagugCGGCGCCGUGUGcaaCU--UGGC- -5'
21224 3' -56.2 NC_004778.3 + 97073 0.66 0.858627
Target:  5'- -aCACGCCauguucuuUGGCaACGCGUUGAugCa -3'
miRNA:   3'- aaGUGCGGc-------GCCG-UGUGCAACUugGc -5'
21224 3' -56.2 NC_004778.3 + 77366 0.66 0.848318
Target:  5'- -gCGCGCCGCGcgcuggugcaaugcGCACGCGcc-GGCCGc -3'
miRNA:   3'- aaGUGCGGCGC--------------CGUGUGCaacUUGGC- -5'
21224 3' -56.2 NC_004778.3 + 112482 0.66 0.842626
Target:  5'- cUCGCGCCaGCGGCcgAUGaacucGAGCCGg -3'
miRNA:   3'- aAGUGCGG-CGCCGugUGCaa---CUUGGC- -5'
21224 3' -56.2 NC_004778.3 + 86299 0.67 0.834327
Target:  5'- aUUUGCGCaaaCGGCccguGCGCGUUGAACuCGg -3'
miRNA:   3'- -AAGUGCGgc-GCCG----UGUGCAACUUG-GC- -5'
21224 3' -56.2 NC_004778.3 + 33226 0.67 0.834327
Target:  5'- -gCGgGCCGCuGCAC-CGUUGcGCCa -3'
miRNA:   3'- aaGUgCGGCGcCGUGuGCAACuUGGc -5'
21224 3' -56.2 NC_004778.3 + 26852 0.67 0.834327
Target:  5'- -gCGCGCUGCGuuuCGCGUUGAACa- -3'
miRNA:   3'- aaGUGCGGCGCcguGUGCAACUUGgc -5'
21224 3' -56.2 NC_004778.3 + 75028 0.67 0.817172
Target:  5'- -cCACGCCaGCucGUACAUGUUGAugCa -3'
miRNA:   3'- aaGUGCGG-CGc-CGUGUGCAACUugGc -5'
21224 3' -56.2 NC_004778.3 + 70424 0.67 0.817172
Target:  5'- -aUAUGCCGCGGC-CGCGcac-GCCGu -3'
miRNA:   3'- aaGUGCGGCGCCGuGUGCaacuUGGC- -5'
21224 3' -56.2 NC_004778.3 + 114509 0.67 0.808332
Target:  5'- cUCGC-CCGCGGCGCGCaGggucaAACCGc -3'
miRNA:   3'- aAGUGcGGCGCCGUGUG-Caac--UUGGC- -5'
21224 3' -56.2 NC_004778.3 + 69913 0.67 0.799327
Target:  5'- cUCGCGCCacaccaGUGGCACcaguGCGUUG-GCUGa -3'
miRNA:   3'- aAGUGCGG------CGCCGUG----UGCAACuUGGC- -5'
21224 3' -56.2 NC_004778.3 + 95401 0.67 0.799327
Target:  5'- ---uCGCCGCGGCGCACcaUGc-CCGa -3'
miRNA:   3'- aaguGCGGCGCCGUGUGcaACuuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.