miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21224 5' -59 NC_004778.3 + 38287 0.66 0.747831
Target:  5'- --aGGCUgaucUGCGCCAGC-GCGCa -3'
miRNA:   3'- gagCCGGucaaACGCGGUCGuCGCGc -5'
21224 5' -59 NC_004778.3 + 47918 0.66 0.747831
Target:  5'- --gGGCCAGUUcaccgacaugGUGgaCAGCGGCGCu -3'
miRNA:   3'- gagCCGGUCAAa---------CGCg-GUCGUCGCGc -5'
21224 5' -59 NC_004778.3 + 28696 0.66 0.747831
Target:  5'- -cCGGCCAacaauaGCGCUcgcuGCAGCGCu -3'
miRNA:   3'- gaGCCGGUcaaa--CGCGGu---CGUCGCGc -5'
21224 5' -59 NC_004778.3 + 61352 0.66 0.738128
Target:  5'- uUCGGCUucauGUgcggacgGCGCCGGCgcgucgucgcugAGCGCc -3'
miRNA:   3'- gAGCCGGu---CAaa-----CGCGGUCG------------UCGCGc -5'
21224 5' -59 NC_004778.3 + 56476 0.66 0.738128
Target:  5'- gCUCGGacgaAGUggaggUUGCGCCugAGCAccGCGCGc -3'
miRNA:   3'- -GAGCCgg--UCA-----AACGCGG--UCGU--CGCGC- -5'
21224 5' -59 NC_004778.3 + 95762 0.66 0.738128
Target:  5'- -cCGcGCCGGgcgcuaucCGCgCGGCAGCGCGc -3'
miRNA:   3'- gaGC-CGGUCaaac----GCG-GUCGUCGCGC- -5'
21224 5' -59 NC_004778.3 + 112472 0.66 0.728333
Target:  5'- -gCGG-CAGUcgcucGCGCCAGCGGC-CGa -3'
miRNA:   3'- gaGCCgGUCAaa---CGCGGUCGUCGcGC- -5'
21224 5' -59 NC_004778.3 + 96764 0.66 0.728333
Target:  5'- gUCGGUCAGUauaagaGCGCaCGGUGGuCGCa -3'
miRNA:   3'- gAGCCGGUCAaa----CGCG-GUCGUC-GCGc -5'
21224 5' -59 NC_004778.3 + 74155 0.66 0.728333
Target:  5'- gCUCGGUCAcgaacGUGCUGGCGcuGCGCGg -3'
miRNA:   3'- -GAGCCGGUcaaa-CGCGGUCGU--CGCGC- -5'
21224 5' -59 NC_004778.3 + 9704 0.66 0.718455
Target:  5'- uUCGGCCGGcgcgGCGUCGuGUuccaaaacGGCGCGc -3'
miRNA:   3'- gAGCCGGUCaaa-CGCGGU-CG--------UCGCGC- -5'
21224 5' -59 NC_004778.3 + 71520 0.66 0.718455
Target:  5'- gUUGGCCAGg--GUGUCGGCGGaaGCu -3'
miRNA:   3'- gAGCCGGUCaaaCGCGGUCGUCg-CGc -5'
21224 5' -59 NC_004778.3 + 61808 0.66 0.708503
Target:  5'- -cUGGcCCAGcaUGCGCgCGGCguuGGCGCGc -3'
miRNA:   3'- gaGCC-GGUCaaACGCG-GUCG---UCGCGC- -5'
21224 5' -59 NC_004778.3 + 95248 0.66 0.708503
Target:  5'- aCUCGGgCAuggUGCGCC-GCGGCGa- -3'
miRNA:   3'- -GAGCCgGUcaaACGCGGuCGUCGCgc -5'
21224 5' -59 NC_004778.3 + 2035 0.66 0.698487
Target:  5'- uCUCGGUCguAGUcgGcCGCCAccGCAGcCGCGu -3'
miRNA:   3'- -GAGCCGG--UCAaaC-GCGGU--CGUC-GCGC- -5'
21224 5' -59 NC_004778.3 + 40331 0.66 0.698487
Target:  5'- aCUCGGUauuugaGCaCCGGCAGCGCa -3'
miRNA:   3'- -GAGCCGgucaaaCGcGGUCGUCGCGc -5'
21224 5' -59 NC_004778.3 + 32023 0.66 0.698487
Target:  5'- gUgGGCCAGUUUGCGCaaauaaAGCAuCGa- -3'
miRNA:   3'- gAgCCGGUCAAACGCGg-----UCGUcGCgc -5'
21224 5' -59 NC_004778.3 + 21655 0.66 0.698487
Target:  5'- uUCGGCCg----GCGgUGGCGGCGCc -3'
miRNA:   3'- gAGCCGGucaaaCGCgGUCGUCGCGc -5'
21224 5' -59 NC_004778.3 + 113885 0.66 0.697482
Target:  5'- -aUGGCCGGgc-GCGUCgggcgaaGGCGGCGCc -3'
miRNA:   3'- gaGCCGGUCaaaCGCGG-------UCGUCGCGc -5'
21224 5' -59 NC_004778.3 + 32415 0.67 0.688415
Target:  5'- -cCGGCCAGcgUGCGCgguuGGCAGgacgcCGCGu -3'
miRNA:   3'- gaGCCGGUCaaACGCGg---UCGUC-----GCGC- -5'
21224 5' -59 NC_004778.3 + 16983 0.67 0.688415
Target:  5'- uUUGGCCAGUgUGCGUaaacccuaacaCAGUuugcacguGCGCGg -3'
miRNA:   3'- gAGCCGGUCAaACGCG-----------GUCGu-------CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.