miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21225 3' -53.1 NC_004778.3 + 124310 0.66 0.958275
Target:  5'- gGCGCCggcgUGGGCACGgCGu---CUUCCGg -3'
miRNA:   3'- -UGUGGa---ACUCGUGC-GUuaacGGAGGC- -5'
21225 3' -53.1 NC_004778.3 + 62098 0.66 0.950113
Target:  5'- --uCgUUGAGCACGUAAUgguaguaggUGCCgccgCCGg -3'
miRNA:   3'- uguGgAACUCGUGCGUUA---------ACGGa---GGC- -5'
21225 3' -53.1 NC_004778.3 + 8964 0.67 0.935986
Target:  5'- gGCGCCauucgcUGAGCGCGCccgccGCCUCg- -3'
miRNA:   3'- -UGUGGa-----ACUCGUGCGuuaa-CGGAGgc -5'
21225 3' -53.1 NC_004778.3 + 102360 0.68 0.894022
Target:  5'- aACGCCgUGuGCA-GCAg--GCCUCCGu -3'
miRNA:   3'- -UGUGGaACuCGUgCGUuaaCGGAGGC- -5'
21225 3' -53.1 NC_004778.3 + 36850 0.68 0.879762
Target:  5'- cGCGUCUUggcGAGCGCGguGUUGCCcacggCCGg -3'
miRNA:   3'- -UGUGGAA---CUCGUGCguUAACGGa----GGC- -5'
21225 3' -53.1 NC_004778.3 + 11878 0.68 0.872271
Target:  5'- aGCGCCUUGcacGCACGC--UUGCaaCCGg -3'
miRNA:   3'- -UGUGGAACu--CGUGCGuuAACGgaGGC- -5'
21225 3' -53.1 NC_004778.3 + 101319 0.69 0.864548
Target:  5'- cACACCUUGA-CGCGCA--UGCUgaacugUCCGc -3'
miRNA:   3'- -UGUGGAACUcGUGCGUuaACGG------AGGC- -5'
21225 3' -53.1 NC_004778.3 + 108830 0.7 0.804556
Target:  5'- gGCGCCUucgGAGUcgGCGUAGUaGCCUUCa -3'
miRNA:   3'- -UGUGGAa--CUCG--UGCGUUAaCGGAGGc -5'
21225 3' -53.1 NC_004778.3 + 37542 0.7 0.795238
Target:  5'- uGCACC-UGAGCAacUGCAAUuuaUGCCacggUCCGu -3'
miRNA:   3'- -UGUGGaACUCGU--GCGUUA---ACGG----AGGC- -5'
21225 3' -53.1 NC_004778.3 + 35190 0.71 0.766367
Target:  5'- cGCACCgUGAaaGuCACGCA---GCCUCCGg -3'
miRNA:   3'- -UGUGGaACU--C-GUGCGUuaaCGGAGGC- -5'
21225 3' -53.1 NC_004778.3 + 33998 0.71 0.753479
Target:  5'- uGCACCagcgguuaucggcgUUGAGCGCGCAGgcUGCCgcgugcacgUCCGu -3'
miRNA:   3'- -UGUGG--------------AACUCGUGCGUUa-ACGG---------AGGC- -5'
21225 3' -53.1 NC_004778.3 + 105149 0.72 0.694966
Target:  5'- gGCGCCgc-GGCGCGCuuGUUGgCUCCGu -3'
miRNA:   3'- -UGUGGaacUCGUGCGu-UAACgGAGGC- -5'
21225 3' -53.1 NC_004778.3 + 124084 0.73 0.663306
Target:  5'- gGCGCgcUGAuGCGCGCGGUUggcgGCCUCCGu -3'
miRNA:   3'- -UGUGgaACU-CGUGCGUUAA----CGGAGGC- -5'
21225 3' -53.1 NC_004778.3 + 5621 0.77 0.428458
Target:  5'- uACACgUUGgccauggcaGGCGCGCAGUUGCCUuuGu -3'
miRNA:   3'- -UGUGgAAC---------UCGUGCGUUAACGGAggC- -5'
21225 3' -53.1 NC_004778.3 + 57478 1.1 0.003628
Target:  5'- aACACCUUGAGCACGCAAUUGCCUCCGg -3'
miRNA:   3'- -UGUGGAACUCGUGCGUUAACGGAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.