miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21226 3' -52.5 NC_004778.3 + 101716 0.66 0.962453
Target:  5'- gCGCU-GUacaaUGCGCGGCGUaCGACguuuUGAAAg -3'
miRNA:   3'- -GCGAgCA----ACGCGUCGCA-GUUG----ACUUU- -5'
21226 3' -52.5 NC_004778.3 + 36265 0.66 0.950554
Target:  5'- aCGCgaCGgaGCGCAGCGUUucUUGAAc -3'
miRNA:   3'- -GCGa-GCaaCGCGUCGCAGuuGACUUu -5'
21226 3' -52.5 NC_004778.3 + 28590 0.67 0.946085
Target:  5'- aGCUCaGUgucguuUGCGCguGGCGUCGACgugcgGGGAa -3'
miRNA:   3'- gCGAG-CA------ACGCG--UCGCAGUUGa----CUUU- -5'
21226 3' -52.5 NC_004778.3 + 9200 0.67 0.941358
Target:  5'- gCGCUCGa-GCGCGGCgGUUAACUu--- -3'
miRNA:   3'- -GCGAGCaaCGCGUCG-CAGUUGAcuuu -5'
21226 3' -52.5 NC_004778.3 + 122247 0.67 0.941358
Target:  5'- aCGCUCGcacUUGaaaaGCGGgGUCAauGCUGAu- -3'
miRNA:   3'- -GCGAGC---AACg---CGUCgCAGU--UGACUuu -5'
21226 3' -52.5 NC_004778.3 + 80591 0.68 0.913793
Target:  5'- gGCacauUCGUUGCGC-GCGgugCGGCUGGc- -3'
miRNA:   3'- gCG----AGCAACGCGuCGCa--GUUGACUuu -5'
21226 3' -52.5 NC_004778.3 + 103138 0.68 0.907493
Target:  5'- uGCUCG-UGUGCGGCGgCGGgUGGGu -3'
miRNA:   3'- gCGAGCaACGCGUCGCaGUUgACUUu -5'
21226 3' -52.5 NC_004778.3 + 58252 0.69 0.879734
Target:  5'- gGCUCGagGCGCGGCGgCGGCa---- -3'
miRNA:   3'- gCGAGCaaCGCGUCGCaGUUGacuuu -5'
21226 3' -52.5 NC_004778.3 + 104629 0.69 0.864379
Target:  5'- aCGCgucgaggUGUUGCacGCAGCG-CAGCUGAu- -3'
miRNA:   3'- -GCGa------GCAACG--CGUCGCaGUUGACUuu -5'
21226 3' -52.5 NC_004778.3 + 107796 0.69 0.848103
Target:  5'- gCGCUCGUcUGCGCuAGCGUuuggCAACgcgcagGAAAc -3'
miRNA:   3'- -GCGAGCA-ACGCG-UCGCA----GUUGa-----CUUU- -5'
21226 3' -52.5 NC_004778.3 + 77881 0.72 0.724531
Target:  5'- uCGCUCGgUGCGCGcGgGUguGCUGAGGu -3'
miRNA:   3'- -GCGAGCaACGCGU-CgCAguUGACUUU- -5'
21226 3' -52.5 NC_004778.3 + 106782 0.73 0.661108
Target:  5'- aGCUCGcUGCGCAGCGUUuGCg---- -3'
miRNA:   3'- gCGAGCaACGCGUCGCAGuUGacuuu -5'
21226 3' -52.5 NC_004778.3 + 61064 0.73 0.650389
Target:  5'- uGCUCGaauCGCGGCGcCGACUGAAu -3'
miRNA:   3'- gCGAGCaacGCGUCGCaGUUGACUUu -5'
21226 3' -52.5 NC_004778.3 + 58149 1.06 0.006702
Target:  5'- gCGCUCGUUGCGCAGCGUCAACUGAAAc -3'
miRNA:   3'- -GCGAGCAACGCGUCGCAGUUGACUUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.