miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21226 5' -58.5 NC_004778.3 + 114340 0.66 0.751069
Target:  5'- cGCUUUuguugaGCGGUUugacccuGCGCGcCGCGGGCGa -3'
miRNA:   3'- -CGAAA------CGUCGGu------CGCGUcGCGUCCGC- -5'
21226 5' -58.5 NC_004778.3 + 61898 0.66 0.751069
Target:  5'- cGCUcUGCguuaaaugaacGGCCGGCGaauuaauGGCGUuGGCGg -3'
miRNA:   3'- -CGAaACG-----------UCGGUCGCg------UCGCGuCCGC- -5'
21226 5' -58.5 NC_004778.3 + 33442 0.66 0.751069
Target:  5'- uGCg--GCGGCgcgaaaAGCGCGGCcguccGCAcGGCGg -3'
miRNA:   3'- -CGaaaCGUCGg-----UCGCGUCG-----CGU-CCGC- -5'
21226 5' -58.5 NC_004778.3 + 120938 0.66 0.751069
Target:  5'- gGCggggGCGGUaauacgaugacUGGCGgGGCGCGGGCc -3'
miRNA:   3'- -CGaaa-CGUCG-----------GUCGCgUCGCGUCCGc -5'
21226 5' -58.5 NC_004778.3 + 25878 0.66 0.750096
Target:  5'- ---gUGUGuGCCGGCGCgaccgugGGCGCuGGCa -3'
miRNA:   3'- cgaaACGU-CGGUCGCG-------UCGCGuCCGc -5'
21226 5' -58.5 NC_004778.3 + 70207 0.66 0.741296
Target:  5'- ----gGC-GCCGGUG-GGCGCAGGCc -3'
miRNA:   3'- cgaaaCGuCGGUCGCgUCGCGUCCGc -5'
21226 5' -58.5 NC_004778.3 + 25945 0.66 0.741296
Target:  5'- ----cGCGGCgGG-GCAGCGU-GGCGg -3'
miRNA:   3'- cgaaaCGUCGgUCgCGUCGCGuCCGC- -5'
21226 5' -58.5 NC_004778.3 + 103120 0.66 0.741296
Target:  5'- uGCUauugUUGUAGCaguugcucguGUGCGGCGgCGGGUGg -3'
miRNA:   3'- -CGA----AACGUCGgu--------CGCGUCGC-GUCCGC- -5'
21226 5' -58.5 NC_004778.3 + 89318 0.66 0.738345
Target:  5'- cGUUgUGUAcuggaacccGCUAGUGCcgaucacggagaucGGCGCAGGCGa -3'
miRNA:   3'- -CGAaACGU---------CGGUCGCG--------------UCGCGUCCGC- -5'
21226 5' -58.5 NC_004778.3 + 61810 0.66 0.731425
Target:  5'- gGCUggccCAGCaugcGCGCGGCGUuGGCGc -3'
miRNA:   3'- -CGAaac-GUCGgu--CGCGUCGCGuCCGC- -5'
21226 5' -58.5 NC_004778.3 + 110290 0.66 0.731425
Target:  5'- aGCUgcacugUGCcguauacggaccGGCCGGUGCccaAGCGCucGGCGc -3'
miRNA:   3'- -CGAa-----ACG------------UCGGUCGCG---UCGCGu-CCGC- -5'
21226 5' -58.5 NC_004778.3 + 63465 0.66 0.730434
Target:  5'- gGCguu-CGGCgaaAGCGCcuucuucGGCGCGGGCGg -3'
miRNA:   3'- -CGaaacGUCGg--UCGCG-------UCGCGUCCGC- -5'
21226 5' -58.5 NC_004778.3 + 50002 0.66 0.721468
Target:  5'- ---aUGCAGCCcgcaAGCGCGcccGUGCGGGg- -3'
miRNA:   3'- cgaaACGUCGG----UCGCGU---CGCGUCCgc -5'
21226 5' -58.5 NC_004778.3 + 18813 0.66 0.718464
Target:  5'- uGCUUcGCGGCaacuuucuugggggCGGUagGCGGCGCGcGGCGu -3'
miRNA:   3'- -CGAAaCGUCG--------------GUCG--CGUCGCGU-CCGC- -5'
21226 5' -58.5 NC_004778.3 + 121691 0.66 0.715455
Target:  5'- gGCgugUUGCuGGCCGGCgGCgcuuaccucaccuuuAGCGC-GGCGa -3'
miRNA:   3'- -CGa--AACG-UCGGUCG-CG---------------UCGCGuCCGC- -5'
21226 5' -58.5 NC_004778.3 + 58428 0.66 0.711432
Target:  5'- ----cGCAG-CAGCGCuugaAGCGC-GGCGa -3'
miRNA:   3'- cgaaaCGUCgGUCGCG----UCGCGuCCGC- -5'
21226 5' -58.5 NC_004778.3 + 26745 0.66 0.711432
Target:  5'- ----cGCGGCC--UGCAGCGCGGGa- -3'
miRNA:   3'- cgaaaCGUCGGucGCGUCGCGUCCgc -5'
21226 5' -58.5 NC_004778.3 + 31548 0.66 0.711432
Target:  5'- aGCUgucguaaGCGGCCuuGUGCGGCGCcagcacuuuGGCa -3'
miRNA:   3'- -CGAaa-----CGUCGGu-CGCGUCGCGu--------CCGc -5'
21226 5' -58.5 NC_004778.3 + 85436 0.67 0.701327
Target:  5'- -gUUUGCGG-CGGCGaCGGCauggacGCGGGCGc -3'
miRNA:   3'- cgAAACGUCgGUCGC-GUCG------CGUCCGC- -5'
21226 5' -58.5 NC_004778.3 + 43398 0.67 0.701327
Target:  5'- cGUUUUGCGGCaGGCGU-GCGagccGGCGg -3'
miRNA:   3'- -CGAAACGUCGgUCGCGuCGCgu--CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.