miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21226 5' -58.5 NC_004778.3 + 106628 0.67 0.695235
Target:  5'- ----cGCGGCCAauaguugcgcguuuuGCGC-GCGCAGcGCGc -3'
miRNA:   3'- cgaaaCGUCGGU---------------CGCGuCGCGUC-CGC- -5'
21226 5' -58.5 NC_004778.3 + 57950 0.67 0.691163
Target:  5'- ----cGCGcGCCuGCGCuGCGCuGGCu -3'
miRNA:   3'- cgaaaCGU-CGGuCGCGuCGCGuCCGc -5'
21226 5' -58.5 NC_004778.3 + 32299 0.67 0.690143
Target:  5'- ----aGUGGCCgcGGCGCAuuggagcgccgucGUGCAGGCGc -3'
miRNA:   3'- cgaaaCGUCGG--UCGCGU-------------CGCGUCCGC- -5'
21226 5' -58.5 NC_004778.3 + 82657 0.67 0.680948
Target:  5'- ----aGCGGacuUGGCGCuuGGCGCGGGCGc -3'
miRNA:   3'- cgaaaCGUCg--GUCGCG--UCGCGUCCGC- -5'
21226 5' -58.5 NC_004778.3 + 10895 0.67 0.680948
Target:  5'- cGCgcacacgGCAGCCcGCGgAGCGCGcaGCGa -3'
miRNA:   3'- -CGaaa----CGUCGGuCGCgUCGCGUc-CGC- -5'
21226 5' -58.5 NC_004778.3 + 58285 0.67 0.680948
Target:  5'- gGCUUUGCAggcGUCGGCGCguuuaacucguGGgGCucgAGGCGc -3'
miRNA:   3'- -CGAAACGU---CGGUCGCG-----------UCgCG---UCCGC- -5'
21226 5' -58.5 NC_004778.3 + 124067 0.67 0.679925
Target:  5'- uGCUcgUGCAGaugcaCGGCGCGcugaugcGCGCGguuGGCGg -3'
miRNA:   3'- -CGAa-ACGUCg----GUCGCGU-------CGCGU---CCGC- -5'
21226 5' -58.5 NC_004778.3 + 49604 0.67 0.670694
Target:  5'- ----gGUAGCCgugcgAGCGCAcUGCGGGCGc -3'
miRNA:   3'- cgaaaCGUCGG-----UCGCGUcGCGUCCGC- -5'
21226 5' -58.5 NC_004778.3 + 32824 0.67 0.670694
Target:  5'- ----cGCAGCUGcCGCGGCGCGuGGUGc -3'
miRNA:   3'- cgaaaCGUCGGUcGCGUCGCGU-CCGC- -5'
21226 5' -58.5 NC_004778.3 + 111681 0.67 0.669666
Target:  5'- cGCcgUUGuCGGCUAGCaggccgagcuguuGCAGCGUcGGCGc -3'
miRNA:   3'- -CGa-AAC-GUCGGUCG-------------CGUCGCGuCCGC- -5'
21226 5' -58.5 NC_004778.3 + 121321 0.67 0.660406
Target:  5'- gGC-UUGCAGCU-GCGCcGUGUcGGCGa -3'
miRNA:   3'- -CGaAACGUCGGuCGCGuCGCGuCCGC- -5'
21226 5' -58.5 NC_004778.3 + 108387 0.67 0.657315
Target:  5'- -gUUUGCAcaaaacGCCGccgaccacgcuuuuGcCGCGGCGCAGGUGg -3'
miRNA:   3'- cgAAACGU------CGGU--------------C-GCGUCGCGUCCGC- -5'
21226 5' -58.5 NC_004778.3 + 64310 0.67 0.650096
Target:  5'- aGCUcgGCGGCCacgGGCGCGacGCGCuGaGUGa -3'
miRNA:   3'- -CGAaaCGUCGG---UCGCGU--CGCGuC-CGC- -5'
21226 5' -58.5 NC_004778.3 + 8803 0.67 0.650096
Target:  5'- gGCgagGCGGCgGGCGCgcucAGCGaauGGCGc -3'
miRNA:   3'- -CGaaaCGUCGgUCGCG----UCGCgu-CCGC- -5'
21226 5' -58.5 NC_004778.3 + 83229 0.68 0.639771
Target:  5'- aGCg--GCGGCCAGCu--GCaCGGGCGa -3'
miRNA:   3'- -CGaaaCGUCGGUCGcguCGcGUCCGC- -5'
21226 5' -58.5 NC_004778.3 + 57934 0.68 0.636672
Target:  5'- ---aUGCAGCUgucggaauacguguGGCGCuuGGCGC-GGCGg -3'
miRNA:   3'- cgaaACGUCGG--------------UCGCG--UCGCGuCCGC- -5'
21226 5' -58.5 NC_004778.3 + 21088 0.68 0.619112
Target:  5'- ----gGC-GUCAGCGCGGUGCAGcccGCGg -3'
miRNA:   3'- cgaaaCGuCGGUCGCGUCGCGUC---CGC- -5'
21226 5' -58.5 NC_004778.3 + 121608 0.68 0.608793
Target:  5'- gGCg--GCAGUUAcuauguGCGCGGCGCcgacGGCGg -3'
miRNA:   3'- -CGaaaCGUCGGU------CGCGUCGCGu---CCGC- -5'
21226 5' -58.5 NC_004778.3 + 85469 0.68 0.608793
Target:  5'- gGCgUUUGCGG-CGGCGaCGGCauggacGCGGGCGu -3'
miRNA:   3'- -CG-AAACGUCgGUCGC-GUCG------CGUCCGC- -5'
21226 5' -58.5 NC_004778.3 + 49289 0.68 0.598492
Target:  5'- cGCUcUUGUcGCCgaacAGCGCGGCGCGgucauuggacgcGGCGc -3'
miRNA:   3'- -CGA-AACGuCGG----UCGCGUCGCGU------------CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.