miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21226 5' -58.5 NC_004778.3 + 49289 0.68 0.598492
Target:  5'- cGCUcUUGUcGCCgaacAGCGCGGCGCGgucauuggacgcGGCGc -3'
miRNA:   3'- -CGA-AACGuCGG----UCGCGUCGCGU------------CCGC- -5'
21226 5' -58.5 NC_004778.3 + 112390 0.7 0.478714
Target:  5'- aGCgc-GCGGUC-GCGCAGCuuAGGCGg -3'
miRNA:   3'- -CGaaaCGUCGGuCGCGUCGcgUCCGC- -5'
21226 5' -58.5 NC_004778.3 + 61640 0.7 0.507727
Target:  5'- ----cGCAGCCAGCGCGcgccaacgccgcGCGCaugcuGGGCc -3'
miRNA:   3'- cgaaaCGUCGGUCGCGU------------CGCG-----UCCGc -5'
21226 5' -58.5 NC_004778.3 + 45427 0.7 0.517565
Target:  5'- aGUUUUGCuGGCgCGGCGCuuaucAGUGCuaAGGCGg -3'
miRNA:   3'- -CGAAACG-UCG-GUCGCG-----UCGCG--UCCGC- -5'
21226 5' -58.5 NC_004778.3 + 65741 0.69 0.547506
Target:  5'- -gUUUGCAGaCGGCGUuuGGCGCAgcgagccgGGCGg -3'
miRNA:   3'- cgAAACGUCgGUCGCG--UCGCGU--------CCGC- -5'
21226 5' -58.5 NC_004778.3 + 112221 0.69 0.547506
Target:  5'- ----aGCGGCC-GCGCGGUcCAGGUGa -3'
miRNA:   3'- cgaaaCGUCGGuCGCGUCGcGUCCGC- -5'
21226 5' -58.5 NC_004778.3 + 34394 0.69 0.557611
Target:  5'- uUUUUGCAGCUcguGGCcgggcugcuccgGCAGCGC-GGCGu -3'
miRNA:   3'- cGAAACGUCGG---UCG------------CGUCGCGuCCGC- -5'
21226 5' -58.5 NC_004778.3 + 46757 0.69 0.557611
Target:  5'- ----aGCGGCCAGCGCGuacGUGCcauGGUGu -3'
miRNA:   3'- cgaaaCGUCGGUCGCGU---CGCGu--CCGC- -5'
21226 5' -58.5 NC_004778.3 + 27963 0.69 0.567769
Target:  5'- cGCUcgUGCAgGCguGCGCuuCGCAGcGCGa -3'
miRNA:   3'- -CGAa-ACGU-CGguCGCGucGCGUC-CGC- -5'
21226 5' -58.5 NC_004778.3 + 96598 0.71 0.45054
Target:  5'- ---cUGCuAGCCAGCGCGGCGgccgcUAGcGCGa -3'
miRNA:   3'- cgaaACG-UCGGUCGCGUCGC-----GUC-CGC- -5'
21226 5' -58.5 NC_004778.3 + 98721 0.71 0.441353
Target:  5'- ----gGCAGCCGGcCGCGGCcGCAGcGUGc -3'
miRNA:   3'- cgaaaCGUCGGUC-GCGUCG-CGUC-CGC- -5'
21226 5' -58.5 NC_004778.3 + 71451 0.71 0.432272
Target:  5'- gGCgagGguGUCGGCgGgGGCGUAGGCGa -3'
miRNA:   3'- -CGaaaCguCGGUCG-CgUCGCGUCCGC- -5'
21226 5' -58.5 NC_004778.3 + 29195 0.73 0.327933
Target:  5'- cGCUcgGCAGCCaaucgcgcacgcggcAGuCGCAGaaaaaGCAGGCGg -3'
miRNA:   3'- -CGAaaCGUCGG---------------UC-GCGUCg----CGUCCGC- -5'
21226 5' -58.5 NC_004778.3 + 1684 0.73 0.332456
Target:  5'- ---gUGCGGCCAGCaGCGcgaGCAGGCGc -3'
miRNA:   3'- cgaaACGUCGGUCG-CGUcg-CGUCCGC- -5'
21226 5' -58.5 NC_004778.3 + 6236 0.72 0.4057
Target:  5'- uGCUUggauuCGGCCuuuUGCAGCGCGGGCa -3'
miRNA:   3'- -CGAAac---GUCGGuc-GCGUCGCGUCCGc -5'
21226 5' -58.5 NC_004778.3 + 124279 0.71 0.42241
Target:  5'- aGCUcgGCGcGCUucaagaaugcugaAGCGCGGCGCcGGCGu -3'
miRNA:   3'- -CGAaaCGU-CGG-------------UCGCGUCGCGuCCGC- -5'
21226 5' -58.5 NC_004778.3 + 81723 0.71 0.426876
Target:  5'- cGCUUaGUAGCggcgccugcgauaucCGGCGCGGCgGguGGCGg -3'
miRNA:   3'- -CGAAaCGUCG---------------GUCGCGUCG-CguCCGC- -5'
21226 5' -58.5 NC_004778.3 + 71307 0.71 0.432272
Target:  5'- gGCgagGguGUCGGCgGgGGCGUAGGCGa -3'
miRNA:   3'- -CGaaaCguCGGUCG-CgUCGCGUCCGC- -5'
21226 5' -58.5 NC_004778.3 + 71355 0.71 0.432272
Target:  5'- gGCgagGguGUCGGCgGgAGCGUAGGCGa -3'
miRNA:   3'- -CGaaaCguCGGUCG-CgUCGCGUCCGC- -5'
21226 5' -58.5 NC_004778.3 + 71403 0.71 0.432272
Target:  5'- gGCgagGguGUCGGCgGgGGCGUAGGCGa -3'
miRNA:   3'- -CGaaaCguCGGUCG-CgUCGCGUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.