miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21227 5' -54.6 NC_004778.3 + 56917 0.66 0.899685
Target:  5'- gUCCGcGCUGCUGGCgCAAacuGGCCgAGAUa -3'
miRNA:   3'- -AGGUcCGACGACUG-GUUg--UUGG-UCUA- -5'
21227 5' -54.6 NC_004778.3 + 117313 0.67 0.870991
Target:  5'- cUCCAGGCgagcUGCUGuuguuGCCAuuGCuGCUAGAUu -3'
miRNA:   3'- -AGGUCCG----ACGAC-----UGGU--UGuUGGUCUA- -5'
21227 5' -54.6 NC_004778.3 + 114553 0.67 0.847017
Target:  5'- aCCGcGGCUGCUGACa---AGCCGGc- -3'
miRNA:   3'- aGGU-CCGACGACUGguugUUGGUCua -5'
21227 5' -54.6 NC_004778.3 + 94744 0.68 0.821144
Target:  5'- gUCuGGCUGCUGGCCGA-GACCGa-- -3'
miRNA:   3'- aGGuCCGACGACUGGUUgUUGGUcua -5'
21227 5' -54.6 NC_004778.3 + 51513 0.68 0.784085
Target:  5'- aCCuGGC-GCUGACCAACAcucguaCAGAc -3'
miRNA:   3'- aGGuCCGaCGACUGGUUGUug----GUCUa -5'
21227 5' -54.6 NC_004778.3 + 89167 0.69 0.774426
Target:  5'- cCCGGGCUGgaGAU--GCAGCCGGc- -3'
miRNA:   3'- aGGUCCGACgaCUGguUGUUGGUCua -5'
21227 5' -54.6 NC_004778.3 + 95212 0.69 0.744663
Target:  5'- -aCGGGCUGCUGcCCGuguuCAACCAa-- -3'
miRNA:   3'- agGUCCGACGACuGGUu---GUUGGUcua -5'
21227 5' -54.6 NC_004778.3 + 34409 0.69 0.734514
Target:  5'- gCCGGGCUGCU--CCGGCAGCgCGGc- -3'
miRNA:   3'- aGGUCCGACGAcuGGUUGUUG-GUCua -5'
21227 5' -54.6 NC_004778.3 + 111041 0.71 0.665601
Target:  5'- gCCAGGC-GCUGGCCAGCAguucgcuguacacgcGCCucGAg -3'
miRNA:   3'- aGGUCCGaCGACUGGUUGU---------------UGGu-CUa -5'
21227 5' -54.6 NC_004778.3 + 90455 0.71 0.628352
Target:  5'- gCCuGGCuUGCuacggcgccgccgUGAUCAACAACCAGAUu -3'
miRNA:   3'- aGGuCCG-ACG-------------ACUGGUUGUUGGUCUA- -5'
21227 5' -54.6 NC_004778.3 + 49200 0.76 0.356697
Target:  5'- cCCGGGCgacccGCUGugCGACAgcaACCAGAUc -3'
miRNA:   3'- aGGUCCGa----CGACugGUUGU---UGGUCUA- -5'
21227 5' -54.6 NC_004778.3 + 71218 0.76 0.356697
Target:  5'- aUCAGGCcGCUGugCAGCGGCUGGAc -3'
miRNA:   3'- aGGUCCGaCGACugGUUGUUGGUCUa -5'
21227 5' -54.6 NC_004778.3 + 59661 1.06 0.004153
Target:  5'- gUCCAGGCUGCUGACCAACAACCAGAUc -3'
miRNA:   3'- -AGGUCCGACGACUGGUUGUUGGUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.