miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21228 5' -59.7 NC_004778.3 + 66878 0.68 0.629462
Target:  5'- gCGUCGGCGCCGUUUuuuuuucgaGUACGgcgucaGGGCCg -3'
miRNA:   3'- -GCGGCCGCGGCAGG---------CGUGUac----UUCGG- -5'
21228 5' -59.7 NC_004778.3 + 36471 0.69 0.559729
Target:  5'- gGUgGGCGCCaccaCGCGCuuggccuacuAUGAAGCCg -3'
miRNA:   3'- gCGgCCGCGGcag-GCGUG----------UACUUCGG- -5'
21228 5' -59.7 NC_004778.3 + 8741 0.69 0.559729
Target:  5'- cCGCCGGCGCCG-UgGCGC-----GCCa -3'
miRNA:   3'- -GCGGCCGCGGCaGgCGUGuacuuCGG- -5'
21228 5' -59.7 NC_004778.3 + 9030 0.69 0.573555
Target:  5'- uCGCaGGCGCCGUcgcacaaguuaaccgCCGCGCucGAGcGCCg -3'
miRNA:   3'- -GCGgCCGCGGCA---------------GGCGUGuaCUU-CGG- -5'
21228 5' -59.7 NC_004778.3 + 76285 0.69 0.578513
Target:  5'- aCGCCGcGCGCCGUgaacggcUCGCAUuUGGcaagcGCCg -3'
miRNA:   3'- -GCGGC-CGCGGCA-------GGCGUGuACUu----CGG- -5'
21228 5' -59.7 NC_004778.3 + 971 0.68 0.58945
Target:  5'- uCGUCGGCGUCGaUCgGCGCAgc-AGCg -3'
miRNA:   3'- -GCGGCCGCGGC-AGgCGUGUacuUCGg -5'
21228 5' -59.7 NC_004778.3 + 33217 0.68 0.599425
Target:  5'- gGCCgGGCGCaaGUCCGCACAaccGcAGCa -3'
miRNA:   3'- gCGG-CCGCGg-CAGGCGUGUa--CuUCGg -5'
21228 5' -59.7 NC_004778.3 + 51138 0.68 0.599425
Target:  5'- aCGCCGGCGCgCGgcugaaGCACuuUGccGCCu -3'
miRNA:   3'- -GCGGCCGCG-GCagg---CGUGu-ACuuCGG- -5'
21228 5' -59.7 NC_004778.3 + 112037 0.68 0.629462
Target:  5'- gGUCGGgGUCGggCCGCACGuUGAAcGCg -3'
miRNA:   3'- gCGGCCgCGGCa-GGCGUGU-ACUU-CGg -5'
21228 5' -59.7 NC_004778.3 + 101197 0.69 0.549911
Target:  5'- -cCUGGCGCCGUCCGgGCuuguUGuucucccGCCa -3'
miRNA:   3'- gcGGCCGCGGCAGGCgUGu---ACuu-----CGG- -5'
21228 5' -59.7 NC_004778.3 + 38112 0.69 0.540146
Target:  5'- aGCgCGcaCGCCGUCCGCGuccgcaGUGAAGCg -3'
miRNA:   3'- gCG-GCc-GCGGCAGGCGUg-----UACUUCGg -5'
21228 5' -59.7 NC_004778.3 + 33443 0.69 0.540146
Target:  5'- gCGgCGGCgcgaaaagcgcgGCCGUCCGCACGgc-GGCg -3'
miRNA:   3'- -GCgGCCG------------CGGCAGGCGUGUacuUCGg -5'
21228 5' -59.7 NC_004778.3 + 80699 0.73 0.362635
Target:  5'- gGCCGGCuuguGCUGaaacaCGCACAUGuGGCCg -3'
miRNA:   3'- gCGGCCG----CGGCag---GCGUGUACuUCGG- -5'
21228 5' -59.7 NC_004778.3 + 95764 0.71 0.418487
Target:  5'- gCGCCgGGCGCUaUCCGCGCGgcagcgcgccGGCCg -3'
miRNA:   3'- -GCGG-CCGCGGcAGGCGUGUacu-------UCGG- -5'
21228 5' -59.7 NC_004778.3 + 30914 0.71 0.428874
Target:  5'- uGCCGGUGCUGguuugcggCCGCAUgAUGgcGUCa -3'
miRNA:   3'- gCGGCCGCGGCa-------GGCGUG-UACuuCGG- -5'
21228 5' -59.7 NC_004778.3 + 21193 0.71 0.428874
Target:  5'- uCGCCGGCggacgugcaGCCGU-UGCugGUGucGCCg -3'
miRNA:   3'- -GCGGCCG---------CGGCAgGCGugUACuuCGG- -5'
21228 5' -59.7 NC_004778.3 + 121448 0.71 0.428874
Target:  5'- cCGUCGGCGCCG--CGCACAUaGuaacuGCCg -3'
miRNA:   3'- -GCGGCCGCGGCagGCGUGUA-Cuu---CGG- -5'
21228 5' -59.7 NC_004778.3 + 4666 0.7 0.492309
Target:  5'- aGCCuGGUGCCGUcgauaacgcggCCGCACggaGUGAAcucguGCCa -3'
miRNA:   3'- gCGG-CCGCGGCA-----------GGCGUG---UACUU-----CGG- -5'
21228 5' -59.7 NC_004778.3 + 46375 0.7 0.501729
Target:  5'- uGUuuaGGCGCCGUUCGCGCGacuUGcucuGCCa -3'
miRNA:   3'- gCGg--CCGCGGCAGGCGUGU---ACuu--CGG- -5'
21228 5' -59.7 NC_004778.3 + 51429 0.69 0.530441
Target:  5'- uCGUCGGUGCacaagCgGUACAUGAGGCa -3'
miRNA:   3'- -GCGGCCGCGgca--GgCGUGUACUUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.