miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21229 5' -54.4 NC_004778.3 + 19105 0.65 0.929998
Target:  5'- -----cCCCAAUUGGCaaagcugguucggGCGCGCgAGCg -3'
miRNA:   3'- uguacaGGGUUAACCGg------------UGCGCG-UCG- -5'
21229 5' -54.4 NC_004778.3 + 2375 0.65 0.929998
Target:  5'- cGCGUGUgCCGAaacuuccgcgcggUGGCCgACGUGCccGCg -3'
miRNA:   3'- -UGUACAgGGUUa------------ACCGG-UGCGCGu-CG- -5'
21229 5' -54.4 NC_004778.3 + 14459 0.66 0.928387
Target:  5'- ---cGUCCCAgcugcggcgaaacguGUuggUGGCCACGUugacuucGCGGCc -3'
miRNA:   3'- uguaCAGGGU---------------UA---ACCGGUGCG-------CGUCG- -5'
21229 5' -54.4 NC_004778.3 + 83891 0.66 0.926752
Target:  5'- aACGcGUCCacgggGGCCAcCGCGCcuaAGCu -3'
miRNA:   3'- -UGUaCAGGguuaaCCGGU-GCGCG---UCG- -5'
21229 5' -54.4 NC_004778.3 + 52280 0.66 0.926752
Target:  5'- uGCAUGUgcaCUCGGUUGGCguUGUGCAa- -3'
miRNA:   3'- -UGUACA---GGGUUAACCGguGCGCGUcg -5'
21229 5' -54.4 NC_004778.3 + 52215 0.66 0.92114
Target:  5'- cGCAguUGUUgCGAcaucGCUGCGCGCGGCg -3'
miRNA:   3'- -UGU--ACAGgGUUaac-CGGUGCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 32311 0.66 0.92114
Target:  5'- cAUAUGUUUgGAagUGGCCGCGgCGCAuuggaGCg -3'
miRNA:   3'- -UGUACAGGgUUa-ACCGGUGC-GCGU-----CG- -5'
21229 5' -54.4 NC_004778.3 + 89758 0.66 0.92114
Target:  5'- uGCGUGUUCauuAUUGugaacaauGCgCGCGUGCGGCg -3'
miRNA:   3'- -UGUACAGGgu-UAAC--------CG-GUGCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 114032 0.66 0.919406
Target:  5'- cACGUGcuccagCCCGucuuuggucuuuagGUUGGCCGCGCgGCcgaaagugAGCa -3'
miRNA:   3'- -UGUACa-----GGGU--------------UAACCGGUGCG-CG--------UCG- -5'
21229 5' -54.4 NC_004778.3 + 80617 0.66 0.915274
Target:  5'- ---aGUCCCAuacgagcgAUUcGCUGCGCaGCAGCg -3'
miRNA:   3'- uguaCAGGGU--------UAAcCGGUGCG-CGUCG- -5'
21229 5' -54.4 NC_004778.3 + 121781 0.66 0.909156
Target:  5'- aACGUGcgCUCGGccgacggcgUGGaCCGCGCGCuGCa -3'
miRNA:   3'- -UGUACa-GGGUUa--------ACC-GGUGCGCGuCG- -5'
21229 5' -54.4 NC_004778.3 + 9852 0.66 0.909156
Target:  5'- cAUAUGgagaccgCCCAaauAUUGGCUccuuACGCGCcGCc -3'
miRNA:   3'- -UGUACa------GGGU---UAACCGG----UGCGCGuCG- -5'
21229 5' -54.4 NC_004778.3 + 38628 0.66 0.909156
Target:  5'- -aAUGgcUUCCAuugUGGCUGCGgGCAGUa -3'
miRNA:   3'- ugUAC--AGGGUua-ACCGGUGCgCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 21250 0.67 0.898848
Target:  5'- uGCA-GUCCgcgcggcagguugagCAGaUGGCCcgugAUGCGCAGCg -3'
miRNA:   3'- -UGUaCAGG---------------GUUaACCGG----UGCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 117062 0.67 0.896173
Target:  5'- aGCGUGUuuugcaCCCAgg-GGUUgagguCGCGCAGCg -3'
miRNA:   3'- -UGUACA------GGGUuaaCCGGu----GCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 119024 0.67 0.889313
Target:  5'- cGCAuuUGUCCuCAGUUGcGUgCGCGCGCcGUg -3'
miRNA:   3'- -UGU--ACAGG-GUUAAC-CG-GUGCGCGuCG- -5'
21229 5' -54.4 NC_004778.3 + 95790 0.67 0.889313
Target:  5'- cACGcGUCCgAAUUGGCCACuauGCaaCGGCc -3'
miRNA:   3'- -UGUaCAGGgUUAACCGGUG---CGc-GUCG- -5'
21229 5' -54.4 NC_004778.3 + 92998 0.67 0.889313
Target:  5'- ---aGUCgCCGcc-GGCCgcgugaACGCGCAGCa -3'
miRNA:   3'- uguaCAG-GGUuaaCCGG------UGCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 82643 0.67 0.888614
Target:  5'- cGCAUGUCgaCCAAagcggacUUGGCgcUugGCGCGGg -3'
miRNA:   3'- -UGUACAG--GGUU-------AACCG--GugCGCGUCg -5'
21229 5' -54.4 NC_004778.3 + 95388 0.67 0.882213
Target:  5'- cCAUG-CCCGAguccgcggcgauUUGGUugaaCACGgGCAGCa -3'
miRNA:   3'- uGUACaGGGUU------------AACCG----GUGCgCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.