Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21229 | 5' | -54.4 | NC_004778.3 | + | 19105 | 0.65 | 0.929998 |
Target: 5'- -----cCCCAAUUGGCaaagcugguucggGCGCGCgAGCg -3' miRNA: 3'- uguacaGGGUUAACCGg------------UGCGCG-UCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 2375 | 0.65 | 0.929998 |
Target: 5'- cGCGUGUgCCGAaacuuccgcgcggUGGCCgACGUGCccGCg -3' miRNA: 3'- -UGUACAgGGUUa------------ACCGG-UGCGCGu-CG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 32311 | 0.66 | 0.92114 |
Target: 5'- cAUAUGUUUgGAagUGGCCGCGgCGCAuuggaGCg -3' miRNA: 3'- -UGUACAGGgUUa-ACCGGUGC-GCGU-----CG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 38628 | 0.66 | 0.909156 |
Target: 5'- -aAUGgcUUCCAuugUGGCUGCGgGCAGUa -3' miRNA: 3'- ugUAC--AGGGUua-ACCGGUGCgCGUCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 80617 | 0.66 | 0.915274 |
Target: 5'- ---aGUCCCAuacgagcgAUUcGCUGCGCaGCAGCg -3' miRNA: 3'- uguaCAGGGU--------UAAcCGGUGCG-CGUCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 114032 | 0.66 | 0.919406 |
Target: 5'- cACGUGcuccagCCCGucuuuggucuuuagGUUGGCCGCGCgGCcgaaagugAGCa -3' miRNA: 3'- -UGUACa-----GGGU--------------UAACCGGUGCG-CG--------UCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 52215 | 0.66 | 0.92114 |
Target: 5'- cGCAguUGUUgCGAcaucGCUGCGCGCGGCg -3' miRNA: 3'- -UGU--ACAGgGUUaac-CGGUGCGCGUCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 52280 | 0.66 | 0.926752 |
Target: 5'- uGCAUGUgcaCUCGGUUGGCguUGUGCAa- -3' miRNA: 3'- -UGUACA---GGGUUAACCGguGCGCGUcg -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 14459 | 0.66 | 0.928387 |
Target: 5'- ---cGUCCCAgcugcggcgaaacguGUuggUGGCCACGUugacuucGCGGCc -3' miRNA: 3'- uguaCAGGGU---------------UA---ACCGGUGCG-------CGUCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 9852 | 0.66 | 0.909156 |
Target: 5'- cAUAUGgagaccgCCCAaauAUUGGCUccuuACGCGCcGCc -3' miRNA: 3'- -UGUACa------GGGU---UAACCGG----UGCGCGuCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 83891 | 0.66 | 0.926752 |
Target: 5'- aACGcGUCCacgggGGCCAcCGCGCcuaAGCu -3' miRNA: 3'- -UGUaCAGGguuaaCCGGU-GCGCG---UCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 89758 | 0.66 | 0.92114 |
Target: 5'- uGCGUGUUCauuAUUGugaacaauGCgCGCGUGCGGCg -3' miRNA: 3'- -UGUACAGGgu-UAAC--------CG-GUGCGCGUCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 121781 | 0.66 | 0.909156 |
Target: 5'- aACGUGcgCUCGGccgacggcgUGGaCCGCGCGCuGCa -3' miRNA: 3'- -UGUACa-GGGUUa--------ACC-GGUGCGCGuCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 92998 | 0.67 | 0.889313 |
Target: 5'- ---aGUCgCCGcc-GGCCgcgugaACGCGCAGCa -3' miRNA: 3'- uguaCAG-GGUuaaCCGG------UGCGCGUCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 117062 | 0.67 | 0.896173 |
Target: 5'- aGCGUGUuuugcaCCCAgg-GGUUgagguCGCGCAGCg -3' miRNA: 3'- -UGUACA------GGGUuaaCCGGu----GCGCGUCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 95790 | 0.67 | 0.889313 |
Target: 5'- cACGcGUCCgAAUUGGCCACuauGCaaCGGCc -3' miRNA: 3'- -UGUaCAGGgUUAACCGGUG---CGc-GUCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 119024 | 0.67 | 0.889313 |
Target: 5'- cGCAuuUGUCCuCAGUUGcGUgCGCGCGCcGUg -3' miRNA: 3'- -UGU--ACAGG-GUUAAC-CG-GUGCGCGuCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 72224 | 0.67 | 0.874878 |
Target: 5'- uGCAaGUCCauguUUGGCgACGCGUucGCg -3' miRNA: 3'- -UGUaCAGGguu-AACCGgUGCGCGu-CG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 82643 | 0.67 | 0.888614 |
Target: 5'- cGCAUGUCgaCCAAagcggacUUGGCgcUugGCGCGGg -3' miRNA: 3'- -UGUACAG--GGUU-------AACCG--GugCGCGUCg -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 21250 | 0.67 | 0.898848 |
Target: 5'- uGCA-GUCCgcgcggcagguugagCAGaUGGCCcgugAUGCGCAGCg -3' miRNA: 3'- -UGUaCAGG---------------GUUaACCGG----UGCGCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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