miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21229 5' -54.4 NC_004778.3 + 62144 1.12 0.00191
Target:  5'- uACAUGUCCCAAUUGGCCACGCGCAGCg -3'
miRNA:   3'- -UGUACAGGGUUAACCGGUGCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 103970 0.78 0.325969
Target:  5'- aGCAgGUCCUcuUUGGCCACGUuCAGCg -3'
miRNA:   3'- -UGUaCAGGGuuAACCGGUGCGcGUCG- -5'
21229 5' -54.4 NC_004778.3 + 121853 0.77 0.379956
Target:  5'- aACGUG-CCCGAcgcgGGCCugcacgugaagcgcACGCGCAGCg -3'
miRNA:   3'- -UGUACaGGGUUaa--CCGG--------------UGCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 98831 0.75 0.445206
Target:  5'- aGCAUG-CCCAAU--GCCACggaGCGCGGCa -3'
miRNA:   3'- -UGUACaGGGUUAacCGGUG---CGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 56586 0.72 0.627219
Target:  5'- uCGUGUCCCAcaugaUGGCCACcaaaCGCgAGCa -3'
miRNA:   3'- uGUACAGGGUua---ACCGGUGc---GCG-UCG- -5'
21229 5' -54.4 NC_004778.3 + 6724 0.72 0.648295
Target:  5'- -aAUGcUCCUc-UUGGCCGCGCGCAaacGCg -3'
miRNA:   3'- ugUAC-AGGGuuAACCGGUGCGCGU---CG- -5'
21229 5' -54.4 NC_004778.3 + 62015 0.71 0.690209
Target:  5'- aGCuUGUCCCAAUUaGCa--GCGCAGUg -3'
miRNA:   3'- -UGuACAGGGUUAAcCGgugCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 57790 0.71 0.700583
Target:  5'- gACAUGggggaCAuggUGGCCACGCGCccguGCg -3'
miRNA:   3'- -UGUACagg--GUua-ACCGGUGCGCGu---CG- -5'
21229 5' -54.4 NC_004778.3 + 55606 0.7 0.707809
Target:  5'- cCAUGgauuuugaCCAGUUGGCCACGUGUuuaaccgacggacuGGCc -3'
miRNA:   3'- uGUACag------GGUUAACCGGUGCGCG--------------UCG- -5'
21229 5' -54.4 NC_004778.3 + 17080 0.7 0.761197
Target:  5'- uUAUGgaaCCCGAcaaGGCCguguugcuguGCGCGCGGCg -3'
miRNA:   3'- uGUACa--GGGUUaa-CCGG----------UGCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 14794 0.69 0.788122
Target:  5'- cACAcgGUCCCGcgUGcaguacgacgaCACGCGCGGCu -3'
miRNA:   3'- -UGUa-CAGGGUuaACcg---------GUGCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 34038 0.69 0.790003
Target:  5'- uACAUGUCCCAGUgccGGUUguggauggGCGUGcCGGUg -3'
miRNA:   3'- -UGUACAGGGUUAa--CCGG--------UGCGC-GUCG- -5'
21229 5' -54.4 NC_004778.3 + 7150 0.69 0.790003
Target:  5'- ---cGUCUCGGcgGGCgGCGCGCcgAGCa -3'
miRNA:   3'- uguaCAGGGUUaaCCGgUGCGCG--UCG- -5'
21229 5' -54.4 NC_004778.3 + 30271 0.68 0.823635
Target:  5'- gGCAUGUugcgcaaguuuacgCCCAucaacGCCAUGCGCAcGCa -3'
miRNA:   3'- -UGUACA--------------GGGUuaac-CGGUGCGCGU-CG- -5'
21229 5' -54.4 NC_004778.3 + 16242 0.68 0.834875
Target:  5'- cACAcG-CCCGAguugaaagUGGCgACGCGCGGg -3'
miRNA:   3'- -UGUaCaGGGUUa-------ACCGgUGCGCGUCg -5'
21229 5' -54.4 NC_004778.3 + 80286 0.68 0.843296
Target:  5'- -aGUGUCCCGucccGUCGCGCgacugGCAGCg -3'
miRNA:   3'- ugUACAGGGUuaacCGGUGCG-----CGUCG- -5'
21229 5' -54.4 NC_004778.3 + 38387 0.68 0.843296
Target:  5'- aACGUGcacgaCUguGUacUGGCCGUGCGCAGCg -3'
miRNA:   3'- -UGUACa----GGguUA--ACCGGUGCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 32953 0.68 0.850703
Target:  5'- ---cGUCCgCAA-UGGCCAgcgacuccauguuCGCGCAGUc -3'
miRNA:   3'- uguaCAGG-GUUaACCGGU-------------GCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 31548 0.68 0.859523
Target:  5'- aGC-UGUCgUAAgcGGCCuuGUGCGGCg -3'
miRNA:   3'- -UGuACAGgGUUaaCCGGugCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 5635 0.67 0.874132
Target:  5'- cGCAgaagcGUCCgUAcacGUUGGCCauggcagGCGCGCAGUu -3'
miRNA:   3'- -UGUa----CAGG-GU---UAACCGG-------UGCGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.