Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21229 | 5' | -54.4 | NC_004778.3 | + | 62462 | 0.67 | 0.882213 |
Target: 5'- uAUAUgGUUUCGGaagcGGUCACGUGCAGCa -3' miRNA: 3'- -UGUA-CAGGGUUaa--CCGGUGCGCGUCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 72224 | 0.67 | 0.874878 |
Target: 5'- uGCAaGUCCauguUUGGCgACGCGUucGCg -3' miRNA: 3'- -UGUaCAGGguu-AACCGgUGCGCGu-CG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 5635 | 0.67 | 0.874132 |
Target: 5'- cGCAgaagcGUCCgUAcacGUUGGCCauggcagGCGCGCAGUu -3' miRNA: 3'- -UGUa----CAGG-GU---UAACCGG-------UGCGCGUCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 31548 | 0.68 | 0.859523 |
Target: 5'- aGC-UGUCgUAAgcGGCCuuGUGCGGCg -3' miRNA: 3'- -UGuACAGgGUUaaCCGGugCGCGUCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 32953 | 0.68 | 0.850703 |
Target: 5'- ---cGUCCgCAA-UGGCCAgcgacuccauguuCGCGCAGUc -3' miRNA: 3'- uguaCAGG-GUUaACCGGU-------------GCGCGUCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 80286 | 0.68 | 0.843296 |
Target: 5'- -aGUGUCCCGucccGUCGCGCgacugGCAGCg -3' miRNA: 3'- ugUACAGGGUuaacCGGUGCG-----CGUCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 38387 | 0.68 | 0.843296 |
Target: 5'- aACGUGcacgaCUguGUacUGGCCGUGCGCAGCg -3' miRNA: 3'- -UGUACa----GGguUA--ACCGGUGCGCGUCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 16242 | 0.68 | 0.834875 |
Target: 5'- cACAcG-CCCGAguugaaagUGGCgACGCGCGGg -3' miRNA: 3'- -UGUaCaGGGUUa-------ACCGgUGCGCGUCg -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 30271 | 0.68 | 0.823635 |
Target: 5'- gGCAUGUugcgcaaguuuacgCCCAucaacGCCAUGCGCAcGCa -3' miRNA: 3'- -UGUACA--------------GGGUuaac-CGGUGCGCGU-CG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 34038 | 0.69 | 0.790003 |
Target: 5'- uACAUGUCCCAGUgccGGUUguggauggGCGUGcCGGUg -3' miRNA: 3'- -UGUACAGGGUUAa--CCGG--------UGCGC-GUCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 7150 | 0.69 | 0.790003 |
Target: 5'- ---cGUCUCGGcgGGCgGCGCGCcgAGCa -3' miRNA: 3'- uguaCAGGGUUaaCCGgUGCGCG--UCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 14794 | 0.69 | 0.788122 |
Target: 5'- cACAcgGUCCCGcgUGcaguacgacgaCACGCGCGGCu -3' miRNA: 3'- -UGUa-CAGGGUuaACcg---------GUGCGCGUCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 17080 | 0.7 | 0.761197 |
Target: 5'- uUAUGgaaCCCGAcaaGGCCguguugcuguGCGCGCGGCg -3' miRNA: 3'- uGUACa--GGGUUaa-CCGG----------UGCGCGUCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 55606 | 0.7 | 0.707809 |
Target: 5'- cCAUGgauuuugaCCAGUUGGCCACGUGUuuaaccgacggacuGGCc -3' miRNA: 3'- uGUACag------GGUUAACCGGUGCGCG--------------UCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 57790 | 0.71 | 0.700583 |
Target: 5'- gACAUGggggaCAuggUGGCCACGCGCccguGCg -3' miRNA: 3'- -UGUACagg--GUua-ACCGGUGCGCGu---CG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 62015 | 0.71 | 0.690209 |
Target: 5'- aGCuUGUCCCAAUUaGCa--GCGCAGUg -3' miRNA: 3'- -UGuACAGGGUUAAcCGgugCGCGUCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 6724 | 0.72 | 0.648295 |
Target: 5'- -aAUGcUCCUc-UUGGCCGCGCGCAaacGCg -3' miRNA: 3'- ugUAC-AGGGuuAACCGGUGCGCGU---CG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 56586 | 0.72 | 0.627219 |
Target: 5'- uCGUGUCCCAcaugaUGGCCACcaaaCGCgAGCa -3' miRNA: 3'- uGUACAGGGUua---ACCGGUGc---GCG-UCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 98831 | 0.75 | 0.445206 |
Target: 5'- aGCAUG-CCCAAU--GCCACggaGCGCGGCa -3' miRNA: 3'- -UGUACaGGGUUAacCGGUG---CGCGUCG- -5' |
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21229 | 5' | -54.4 | NC_004778.3 | + | 121853 | 0.77 | 0.379956 |
Target: 5'- aACGUG-CCCGAcgcgGGCCugcacgugaagcgcACGCGCAGCg -3' miRNA: 3'- -UGUACaGGGUUaa--CCGG--------------UGCGCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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