miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21229 5' -54.4 NC_004778.3 + 2375 0.65 0.929998
Target:  5'- cGCGUGUgCCGAaacuuccgcgcggUGGCCgACGUGCccGCg -3'
miRNA:   3'- -UGUACAgGGUUa------------ACCGG-UGCGCGu-CG- -5'
21229 5' -54.4 NC_004778.3 + 5635 0.67 0.874132
Target:  5'- cGCAgaagcGUCCgUAcacGUUGGCCauggcagGCGCGCAGUu -3'
miRNA:   3'- -UGUa----CAGG-GU---UAACCGG-------UGCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 6724 0.72 0.648295
Target:  5'- -aAUGcUCCUc-UUGGCCGCGCGCAaacGCg -3'
miRNA:   3'- ugUAC-AGGGuuAACCGGUGCGCGU---CG- -5'
21229 5' -54.4 NC_004778.3 + 7150 0.69 0.790003
Target:  5'- ---cGUCUCGGcgGGCgGCGCGCcgAGCa -3'
miRNA:   3'- uguaCAGGGUUaaCCGgUGCGCG--UCG- -5'
21229 5' -54.4 NC_004778.3 + 9852 0.66 0.909156
Target:  5'- cAUAUGgagaccgCCCAaauAUUGGCUccuuACGCGCcGCc -3'
miRNA:   3'- -UGUACa------GGGU---UAACCGG----UGCGCGuCG- -5'
21229 5' -54.4 NC_004778.3 + 14459 0.66 0.928387
Target:  5'- ---cGUCCCAgcugcggcgaaacguGUuggUGGCCACGUugacuucGCGGCc -3'
miRNA:   3'- uguaCAGGGU---------------UA---ACCGGUGCG-------CGUCG- -5'
21229 5' -54.4 NC_004778.3 + 14794 0.69 0.788122
Target:  5'- cACAcgGUCCCGcgUGcaguacgacgaCACGCGCGGCu -3'
miRNA:   3'- -UGUa-CAGGGUuaACcg---------GUGCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 16242 0.68 0.834875
Target:  5'- cACAcG-CCCGAguugaaagUGGCgACGCGCGGg -3'
miRNA:   3'- -UGUaCaGGGUUa-------ACCGgUGCGCGUCg -5'
21229 5' -54.4 NC_004778.3 + 17080 0.7 0.761197
Target:  5'- uUAUGgaaCCCGAcaaGGCCguguugcuguGCGCGCGGCg -3'
miRNA:   3'- uGUACa--GGGUUaa-CCGG----------UGCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 19105 0.65 0.929998
Target:  5'- -----cCCCAAUUGGCaaagcugguucggGCGCGCgAGCg -3'
miRNA:   3'- uguacaGGGUUAACCGg------------UGCGCG-UCG- -5'
21229 5' -54.4 NC_004778.3 + 21250 0.67 0.898848
Target:  5'- uGCA-GUCCgcgcggcagguugagCAGaUGGCCcgugAUGCGCAGCg -3'
miRNA:   3'- -UGUaCAGG---------------GUUaACCGG----UGCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 30271 0.68 0.823635
Target:  5'- gGCAUGUugcgcaaguuuacgCCCAucaacGCCAUGCGCAcGCa -3'
miRNA:   3'- -UGUACA--------------GGGUuaac-CGGUGCGCGU-CG- -5'
21229 5' -54.4 NC_004778.3 + 31548 0.68 0.859523
Target:  5'- aGC-UGUCgUAAgcGGCCuuGUGCGGCg -3'
miRNA:   3'- -UGuACAGgGUUaaCCGGugCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 32311 0.66 0.92114
Target:  5'- cAUAUGUUUgGAagUGGCCGCGgCGCAuuggaGCg -3'
miRNA:   3'- -UGUACAGGgUUa-ACCGGUGC-GCGU-----CG- -5'
21229 5' -54.4 NC_004778.3 + 32953 0.68 0.850703
Target:  5'- ---cGUCCgCAA-UGGCCAgcgacuccauguuCGCGCAGUc -3'
miRNA:   3'- uguaCAGG-GUUaACCGGU-------------GCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 34038 0.69 0.790003
Target:  5'- uACAUGUCCCAGUgccGGUUguggauggGCGUGcCGGUg -3'
miRNA:   3'- -UGUACAGGGUUAa--CCGG--------UGCGC-GUCG- -5'
21229 5' -54.4 NC_004778.3 + 38387 0.68 0.843296
Target:  5'- aACGUGcacgaCUguGUacUGGCCGUGCGCAGCg -3'
miRNA:   3'- -UGUACa----GGguUA--ACCGGUGCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 38628 0.66 0.909156
Target:  5'- -aAUGgcUUCCAuugUGGCUGCGgGCAGUa -3'
miRNA:   3'- ugUAC--AGGGUua-ACCGGUGCgCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 52215 0.66 0.92114
Target:  5'- cGCAguUGUUgCGAcaucGCUGCGCGCGGCg -3'
miRNA:   3'- -UGU--ACAGgGUUaac-CGGUGCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 52280 0.66 0.926752
Target:  5'- uGCAUGUgcaCUCGGUUGGCguUGUGCAa- -3'
miRNA:   3'- -UGUACA---GGGUUAACCGguGCGCGUcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.