miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21229 5' -54.4 NC_004778.3 + 38387 0.68 0.843296
Target:  5'- aACGUGcacgaCUguGUacUGGCCGUGCGCAGCg -3'
miRNA:   3'- -UGUACa----GGguUA--ACCGGUGCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 80286 0.68 0.843296
Target:  5'- -aGUGUCCCGucccGUCGCGCgacugGCAGCg -3'
miRNA:   3'- ugUACAGGGUuaacCGGUGCG-----CGUCG- -5'
21229 5' -54.4 NC_004778.3 + 16242 0.68 0.834875
Target:  5'- cACAcG-CCCGAguugaaagUGGCgACGCGCGGg -3'
miRNA:   3'- -UGUaCaGGGUUa-------ACCGgUGCGCGUCg -5'
21229 5' -54.4 NC_004778.3 + 34038 0.69 0.790003
Target:  5'- uACAUGUCCCAGUgccGGUUguggauggGCGUGcCGGUg -3'
miRNA:   3'- -UGUACAGGGUUAa--CCGG--------UGCGC-GUCG- -5'
21229 5' -54.4 NC_004778.3 + 55606 0.7 0.707809
Target:  5'- cCAUGgauuuugaCCAGUUGGCCACGUGUuuaaccgacggacuGGCc -3'
miRNA:   3'- uGUACag------GGUUAACCGGUGCGCG--------------UCG- -5'
21229 5' -54.4 NC_004778.3 + 57790 0.71 0.700583
Target:  5'- gACAUGggggaCAuggUGGCCACGCGCccguGCg -3'
miRNA:   3'- -UGUACagg--GUua-ACCGGUGCGCGu---CG- -5'
21229 5' -54.4 NC_004778.3 + 62015 0.71 0.690209
Target:  5'- aGCuUGUCCCAAUUaGCa--GCGCAGUg -3'
miRNA:   3'- -UGuACAGGGUUAAcCGgugCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 56586 0.72 0.627219
Target:  5'- uCGUGUCCCAcaugaUGGCCACcaaaCGCgAGCa -3'
miRNA:   3'- uGUACAGGGUua---ACCGGUGc---GCG-UCG- -5'
21229 5' -54.4 NC_004778.3 + 121853 0.77 0.379956
Target:  5'- aACGUG-CCCGAcgcgGGCCugcacgugaagcgcACGCGCAGCg -3'
miRNA:   3'- -UGUACaGGGUUaa--CCGG--------------UGCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 31548 0.68 0.859523
Target:  5'- aGC-UGUCgUAAgcGGCCuuGUGCGGCg -3'
miRNA:   3'- -UGuACAGgGUUaaCCGGugCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 5635 0.67 0.874132
Target:  5'- cGCAgaagcGUCCgUAcacGUUGGCCauggcagGCGCGCAGUu -3'
miRNA:   3'- -UGUa----CAGG-GU---UAACCGG-------UGCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 83891 0.66 0.926752
Target:  5'- aACGcGUCCacgggGGCCAcCGCGCcuaAGCu -3'
miRNA:   3'- -UGUaCAGGguuaaCCGGU-GCGCG---UCG- -5'
21229 5' -54.4 NC_004778.3 + 32311 0.66 0.92114
Target:  5'- cAUAUGUUUgGAagUGGCCGCGgCGCAuuggaGCg -3'
miRNA:   3'- -UGUACAGGgUUa-ACCGGUGC-GCGU-----CG- -5'
21229 5' -54.4 NC_004778.3 + 89758 0.66 0.92114
Target:  5'- uGCGUGUUCauuAUUGugaacaauGCgCGCGUGCGGCg -3'
miRNA:   3'- -UGUACAGGgu-UAAC--------CG-GUGCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 121781 0.66 0.909156
Target:  5'- aACGUGcgCUCGGccgacggcgUGGaCCGCGCGCuGCa -3'
miRNA:   3'- -UGUACa-GGGUUa--------ACC-GGUGCGCGuCG- -5'
21229 5' -54.4 NC_004778.3 + 117062 0.67 0.896173
Target:  5'- aGCGUGUuuugcaCCCAgg-GGUUgagguCGCGCAGCg -3'
miRNA:   3'- -UGUACA------GGGUuaaCCGGu----GCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 95790 0.67 0.889313
Target:  5'- cACGcGUCCgAAUUGGCCACuauGCaaCGGCc -3'
miRNA:   3'- -UGUaCAGGgUUAACCGGUG---CGc-GUCG- -5'
21229 5' -54.4 NC_004778.3 + 119024 0.67 0.889313
Target:  5'- cGCAuuUGUCCuCAGUUGcGUgCGCGCGCcGUg -3'
miRNA:   3'- -UGU--ACAGG-GUUAAC-CG-GUGCGCGuCG- -5'
21229 5' -54.4 NC_004778.3 + 95388 0.67 0.882213
Target:  5'- cCAUG-CCCGAguccgcggcgauUUGGUugaaCACGgGCAGCa -3'
miRNA:   3'- uGUACaGGGUU------------AACCG----GUGCgCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 62462 0.67 0.882213
Target:  5'- uAUAUgGUUUCGGaagcGGUCACGUGCAGCa -3'
miRNA:   3'- -UGUA-CAGGGUUaa--CCGGUGCGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.