miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21229 5' -54.4 NC_004778.3 + 62144 1.12 0.00191
Target:  5'- uACAUGUCCCAAUUGGCCACGCGCAGCg -3'
miRNA:   3'- -UGUACAGGGUUAACCGGUGCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 95790 0.67 0.889313
Target:  5'- cACGcGUCCgAAUUGGCCACuauGCaaCGGCc -3'
miRNA:   3'- -UGUaCAGGgUUAACCGGUG---CGc-GUCG- -5'
21229 5' -54.4 NC_004778.3 + 34038 0.69 0.790003
Target:  5'- uACAUGUCCCAGUgccGGUUguggauggGCGUGcCGGUg -3'
miRNA:   3'- -UGUACAGGGUUAa--CCGG--------UGCGC-GUCG- -5'
21229 5' -54.4 NC_004778.3 + 72224 0.67 0.874878
Target:  5'- uGCAaGUCCauguUUGGCgACGCGUucGCg -3'
miRNA:   3'- -UGUaCAGGguu-AACCGgUGCGCGu-CG- -5'
21229 5' -54.4 NC_004778.3 + 30271 0.68 0.823635
Target:  5'- gGCAUGUugcgcaaguuuacgCCCAucaacGCCAUGCGCAcGCa -3'
miRNA:   3'- -UGUACA--------------GGGUuaac-CGGUGCGCGU-CG- -5'
21229 5' -54.4 NC_004778.3 + 7150 0.69 0.790003
Target:  5'- ---cGUCUCGGcgGGCgGCGCGCcgAGCa -3'
miRNA:   3'- uguaCAGGGUUaaCCGgUGCGCG--UCG- -5'
21229 5' -54.4 NC_004778.3 + 14794 0.69 0.788122
Target:  5'- cACAcgGUCCCGcgUGcaguacgacgaCACGCGCGGCu -3'
miRNA:   3'- -UGUa-CAGGGUuaACcg---------GUGCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 17080 0.7 0.761197
Target:  5'- uUAUGgaaCCCGAcaaGGCCguguugcuguGCGCGCGGCg -3'
miRNA:   3'- uGUACa--GGGUUaa-CCGG----------UGCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 6724 0.72 0.648295
Target:  5'- -aAUGcUCCUc-UUGGCCGCGCGCAaacGCg -3'
miRNA:   3'- ugUAC-AGGGuuAACCGGUGCGCGU---CG- -5'
21229 5' -54.4 NC_004778.3 + 98831 0.75 0.445206
Target:  5'- aGCAUG-CCCAAU--GCCACggaGCGCGGCa -3'
miRNA:   3'- -UGUACaGGGUUAacCGGUG---CGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 82643 0.67 0.888614
Target:  5'- cGCAUGUCgaCCAAagcggacUUGGCgcUugGCGCGGg -3'
miRNA:   3'- -UGUACAG--GGUU-------AACCG--GugCGCGUCg -5'
21229 5' -54.4 NC_004778.3 + 92998 0.67 0.889313
Target:  5'- ---aGUCgCCGcc-GGCCgcgugaACGCGCAGCa -3'
miRNA:   3'- uguaCAG-GGUuaaCCGG------UGCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 2375 0.65 0.929998
Target:  5'- cGCGUGUgCCGAaacuuccgcgcggUGGCCgACGUGCccGCg -3'
miRNA:   3'- -UGUACAgGGUUa------------ACCGG-UGCGCGu-CG- -5'
21229 5' -54.4 NC_004778.3 + 52280 0.66 0.926752
Target:  5'- uGCAUGUgcaCUCGGUUGGCguUGUGCAa- -3'
miRNA:   3'- -UGUACA---GGGUUAACCGguGCGCGUcg -5'
21229 5' -54.4 NC_004778.3 + 114032 0.66 0.919406
Target:  5'- cACGUGcuccagCCCGucuuuggucuuuagGUUGGCCGCGCgGCcgaaagugAGCa -3'
miRNA:   3'- -UGUACa-----GGGU--------------UAACCGGUGCG-CG--------UCG- -5'
21229 5' -54.4 NC_004778.3 + 52215 0.66 0.92114
Target:  5'- cGCAguUGUUgCGAcaucGCUGCGCGCGGCg -3'
miRNA:   3'- -UGU--ACAGgGUUaac-CGGUGCGCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 80617 0.66 0.915274
Target:  5'- ---aGUCCCAuacgagcgAUUcGCUGCGCaGCAGCg -3'
miRNA:   3'- uguaCAGGGU--------UAAcCGGUGCG-CGUCG- -5'
21229 5' -54.4 NC_004778.3 + 38628 0.66 0.909156
Target:  5'- -aAUGgcUUCCAuugUGGCUGCGgGCAGUa -3'
miRNA:   3'- ugUAC--AGGGUua-ACCGGUGCgCGUCG- -5'
21229 5' -54.4 NC_004778.3 + 9852 0.66 0.909156
Target:  5'- cAUAUGgagaccgCCCAaauAUUGGCUccuuACGCGCcGCc -3'
miRNA:   3'- -UGUACa------GGGU---UAACCGG----UGCGCGuCG- -5'
21229 5' -54.4 NC_004778.3 + 21250 0.67 0.898848
Target:  5'- uGCA-GUCCgcgcggcagguugagCAGaUGGCCcgugAUGCGCAGCg -3'
miRNA:   3'- -UGUaCAGG---------------GUUaACCGG----UGCGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.