miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21230 3' -60.3 NC_004778.3 + 8727 0.66 0.718825
Target:  5'- --cGAGaacUuuGAcgCCGCCgGCGCCGu -3'
miRNA:   3'- guaCUC---GggCUuaGGCGGgCGCGGCu -5'
21230 3' -60.3 NC_004778.3 + 118894 0.66 0.718825
Target:  5'- -uUGAGUgUGcg-CCG-CCGCGCCGAg -3'
miRNA:   3'- guACUCGgGCuuaGGCgGGCGCGGCU- -5'
21230 3' -60.3 NC_004778.3 + 106276 0.66 0.709068
Target:  5'- aCAUGAGCuaCUGcAAUCgucagCGCCCGUGCCc- -3'
miRNA:   3'- -GUACUCG--GGC-UUAG-----GCGGGCGCGGcu -5'
21230 3' -60.3 NC_004778.3 + 52830 0.66 0.709068
Target:  5'- --gGAcCCCGAcgCCauGCCgGCGCUGAu -3'
miRNA:   3'- guaCUcGGGCUuaGG--CGGgCGCGGCU- -5'
21230 3' -60.3 NC_004778.3 + 106147 0.66 0.709068
Target:  5'- --cGuGCCCGuuUCCGCCCG-GCa-- -3'
miRNA:   3'- guaCuCGGGCuuAGGCGGGCgCGgcu -5'
21230 3' -60.3 NC_004778.3 + 118934 0.66 0.699249
Target:  5'- uGUGcGCgCCGg--CCGCgCCGCGcCCGAa -3'
miRNA:   3'- gUACuCG-GGCuuaGGCG-GGCGC-GGCU- -5'
21230 3' -60.3 NC_004778.3 + 39426 0.66 0.679456
Target:  5'- -uUGAGCaCCGGcgCCGCUU-UGCCGAc -3'
miRNA:   3'- guACUCG-GGCUuaGGCGGGcGCGGCU- -5'
21230 3' -60.3 NC_004778.3 + 61514 0.66 0.678462
Target:  5'- --cGAcGCgCCGGcgCCGUCCGCacaugaaGCCGAa -3'
miRNA:   3'- guaCU-CG-GGCUuaGGCGGGCG-------CGGCU- -5'
21230 3' -60.3 NC_004778.3 + 97966 0.66 0.669499
Target:  5'- cCAUGAGCuuGAa--CGagCGCGCCGGg -3'
miRNA:   3'- -GUACUCGggCUuagGCggGCGCGGCU- -5'
21230 3' -60.3 NC_004778.3 + 101988 0.66 0.659514
Target:  5'- uCGUGGuCuuGGA-CCGCCCGC-CCGAu -3'
miRNA:   3'- -GUACUcGggCUUaGGCGGGCGcGGCU- -5'
21230 3' -60.3 NC_004778.3 + 111780 0.67 0.647504
Target:  5'- -uUGGGCCaaaaccgcguugGAAUCUGCcacgggCCGCGCCGGu -3'
miRNA:   3'- guACUCGGg-----------CUUAGGCG------GGCGCGGCU- -5'
21230 3' -60.3 NC_004778.3 + 74302 0.67 0.629461
Target:  5'- --cGAGgCCGGucugCgGCUCGCGCUGAu -3'
miRNA:   3'- guaCUCgGGCUua--GgCGGGCGCGGCU- -5'
21230 3' -60.3 NC_004778.3 + 11913 0.67 0.599425
Target:  5'- --cGGGUCCGcgcaacUCCGCCUGuCGCCGc -3'
miRNA:   3'- guaCUCGGGCuu----AGGCGGGC-GCGGCu -5'
21230 3' -60.3 NC_004778.3 + 89128 0.68 0.58945
Target:  5'- --aGAcGCgCGu-UUCGCCUGCGCCGAu -3'
miRNA:   3'- guaCU-CGgGCuuAGGCGGGCGCGGCU- -5'
21230 3' -60.3 NC_004778.3 + 112186 0.68 0.58945
Target:  5'- aCGUGcGGCCCGAccCCGaCCCGCuguuucCCGAg -3'
miRNA:   3'- -GUAC-UCGGGCUuaGGC-GGGCGc-----GGCU- -5'
21230 3' -60.3 NC_004778.3 + 50003 0.68 0.540146
Target:  5'- gAUGcAGCCCGcaagCgCGCCCGUGCgGGg -3'
miRNA:   3'- gUAC-UCGGGCuua-G-GCGGGCGCGgCU- -5'
21230 3' -60.3 NC_004778.3 + 63643 1.08 0.001183
Target:  5'- gCAUGAGCCCGAAUCCGCCCGCGCCGAa -3'
miRNA:   3'- -GUACUCGGGCUUAGGCGGGCGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.