miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21231 3' -50.7 NC_004778.3 + 48866 0.66 0.99504
Target:  5'- aGUUgGUCGCgCACGGccuuggcggcacGCGCGUaucGCa -3'
miRNA:   3'- gCAAgCAGUG-GUGCU------------UGCGCAguuCG- -5'
21231 3' -50.7 NC_004778.3 + 38275 0.66 0.99504
Target:  5'- uGcgCuUCACUGCGGACGCGgacGGCg -3'
miRNA:   3'- gCaaGcAGUGGUGCUUGCGCaguUCG- -5'
21231 3' -50.7 NC_004778.3 + 12512 0.66 0.994237
Target:  5'- uCGUUCGacugugacCACCAgguCGAACaaGUUAAGCa -3'
miRNA:   3'- -GCAAGCa-------GUGGU---GCUUGcgCAGUUCG- -5'
21231 3' -50.7 NC_004778.3 + 38303 0.66 0.994237
Target:  5'- ---gCG-CGCaCGCGAccGCGCGcCGAGCa -3'
miRNA:   3'- gcaaGCaGUG-GUGCU--UGCGCaGUUCG- -5'
21231 3' -50.7 NC_004778.3 + 34306 0.66 0.994237
Target:  5'- --cUUGUCGCCgccgGCGAcCGCGUCGucguacGCg -3'
miRNA:   3'- gcaAGCAGUGG----UGCUuGCGCAGUu-----CG- -5'
21231 3' -50.7 NC_004778.3 + 72385 0.66 0.994237
Target:  5'- -------gGCCGCGAACGCGUCGc-- -3'
miRNA:   3'- gcaagcagUGGUGCUUGCGCAGUucg -5'
21231 3' -50.7 NC_004778.3 + 108644 0.66 0.994237
Target:  5'- gCGacCGUCAgUACGAACcCGUCAcaguucgcgcAGCg -3'
miRNA:   3'- -GCaaGCAGUgGUGCUUGcGCAGU----------UCG- -5'
21231 3' -50.7 NC_004778.3 + 127154 0.66 0.994237
Target:  5'- gCGUUCGUuugacugguaCGCCGUGGGCGUGguaacuuaCAAGCu -3'
miRNA:   3'- -GCAAGCA----------GUGGUGCUUGCGCa-------GUUCG- -5'
21231 3' -50.7 NC_004778.3 + 64308 0.66 0.993332
Target:  5'- --cUCGgcgGCCACGGGCGCGaCGcGCu -3'
miRNA:   3'- gcaAGCag-UGGUGCUUGCGCaGUuCG- -5'
21231 3' -50.7 NC_004778.3 + 129304 0.66 0.992317
Target:  5'- ---cUGUaCGCCGCGGACGCGcCGcAGUu -3'
miRNA:   3'- gcaaGCA-GUGGUGCUUGCGCaGU-UCG- -5'
21231 3' -50.7 NC_004778.3 + 6447 0.66 0.991182
Target:  5'- uGUUCGUCAauguCCAUGGGgggaaaucuaGCGUCGGGg -3'
miRNA:   3'- gCAAGCAGU----GGUGCUUg---------CGCAGUUCg -5'
21231 3' -50.7 NC_004778.3 + 73433 0.67 0.98992
Target:  5'- -cUUCGUUggaAgCGCuGGGCGCGUUggGCg -3'
miRNA:   3'- gcAAGCAG---UgGUG-CUUGCGCAGuuCG- -5'
21231 3' -50.7 NC_004778.3 + 10319 0.67 0.98992
Target:  5'- gCGggCGUUAagGCGAGCGUGaacaaCAAGCg -3'
miRNA:   3'- -GCaaGCAGUggUGCUUGCGCa----GUUCG- -5'
21231 3' -50.7 NC_004778.3 + 112592 0.67 0.98992
Target:  5'- --aUCGauuacaCGCUGCGGccCGCGUCGAGCg -3'
miRNA:   3'- gcaAGCa-----GUGGUGCUu-GCGCAGUUCG- -5'
21231 3' -50.7 NC_004778.3 + 29331 0.67 0.98852
Target:  5'- gGUggcgCGgcgCGCgCugGggUGCGcCAAGCg -3'
miRNA:   3'- gCAa---GCa--GUG-GugCuuGCGCaGUUCG- -5'
21231 3' -50.7 NC_004778.3 + 80361 0.67 0.98852
Target:  5'- --gUCGUCGCaGCGAACGCagccggagaGUCuucAGCg -3'
miRNA:   3'- gcaAGCAGUGgUGCUUGCG---------CAGu--UCG- -5'
21231 3' -50.7 NC_004778.3 + 94664 0.67 0.98852
Target:  5'- ---cCGUCACCAUu--CGCG-CGGGCg -3'
miRNA:   3'- gcaaGCAGUGGUGcuuGCGCaGUUCG- -5'
21231 3' -50.7 NC_004778.3 + 43958 0.67 0.987135
Target:  5'- -cUUUGUCACCGCGAuuauggauuacuuugGCGCGcCGcccaacgcgcggccGGCg -3'
miRNA:   3'- gcAAGCAGUGGUGCU---------------UGCGCaGU--------------UCG- -5'
21231 3' -50.7 NC_004778.3 + 32488 0.67 0.986973
Target:  5'- gCGgUCGUgGCaCGCGAGCuugaacauggcuGCGUCAuGCg -3'
miRNA:   3'- -GCaAGCAgUG-GUGCUUG------------CGCAGUuCG- -5'
21231 3' -50.7 NC_004778.3 + 46279 0.67 0.986973
Target:  5'- gCGUUCGaCAaaGCaAACGCGUucCAAGCa -3'
miRNA:   3'- -GCAAGCaGUggUGcUUGCGCA--GUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.