miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21231 5' -57.8 NC_004778.3 + 38253 0.66 0.83
Target:  5'- cGGCGUG-CGCGCUaGcGUG-CUGUUGc -3'
miRNA:   3'- cCCGCGCuGCGCGA-CuCACuGGCAAC- -5'
21231 5' -57.8 NC_004778.3 + 97173 0.66 0.829169
Target:  5'- uGGGCGuUGGCGCugcucuuuguggaGCUGAuUGuACUGUUGg -3'
miRNA:   3'- -CCCGC-GCUGCG-------------CGACUcAC-UGGCAAC- -5'
21231 5' -57.8 NC_004778.3 + 9428 0.66 0.795466
Target:  5'- uGGCGUGGCGCGCacguugGAcacGGCCGUc- -3'
miRNA:   3'- cCCGCGCUGCGCGa-----CUca-CUGGCAac -5'
21231 5' -57.8 NC_004778.3 + 111916 0.67 0.777298
Target:  5'- uGGCccaaUGGCGCGCUGugcGUGAUCGUg- -3'
miRNA:   3'- cCCGc---GCUGCGCGACu--CACUGGCAac -5'
21231 5' -57.8 NC_004778.3 + 17111 0.68 0.720019
Target:  5'- -cGCGCGGCGCGCcuaccGUGgcaacGCCGUUGc -3'
miRNA:   3'- ccCGCGCUGCGCGacu--CAC-----UGGCAAC- -5'
21231 5' -57.8 NC_004778.3 + 69474 0.68 0.720019
Target:  5'- cGGCGCGACGacaCGCcGGGUGACa---- -3'
miRNA:   3'- cCCGCGCUGC---GCGaCUCACUGgcaac -5'
21231 5' -57.8 NC_004778.3 + 77364 0.69 0.680235
Target:  5'- uGGCGCGccGCGCGCUG-GUGcaaugcgcacgcGCCGg-- -3'
miRNA:   3'- cCCGCGC--UGCGCGACuCAC------------UGGCaac -5'
21231 5' -57.8 NC_004778.3 + 9904 0.69 0.660075
Target:  5'- cGGGCGCGGugUGCGCUuuAGUGAaaaCCGUc- -3'
miRNA:   3'- -CCCGCGCU--GCGCGAc-UCACU---GGCAac -5'
21231 5' -57.8 NC_004778.3 + 28610 0.7 0.569161
Target:  5'- uGGCGuCGACGUGCgggGAaGUGACCa--- -3'
miRNA:   3'- cCCGC-GCUGCGCGa--CU-CACUGGcaac -5'
21231 5' -57.8 NC_004778.3 + 108422 0.71 0.559187
Target:  5'- cGGCGCaggugGACGCGCUG-GUGcGCCGcgGg -3'
miRNA:   3'- cCCGCG-----CUGCGCGACuCAC-UGGCaaC- -5'
21231 5' -57.8 NC_004778.3 + 105610 0.72 0.463043
Target:  5'- aGGCGCGGgauCGgcCGCUGcGUGACCGUUa -3'
miRNA:   3'- cCCGCGCU---GC--GCGACuCACUGGCAAc -5'
21231 5' -57.8 NC_004778.3 + 29333 0.76 0.29434
Target:  5'- uGGCGCGGCGCGCgcugGGGUGcGCCa--- -3'
miRNA:   3'- cCCGCGCUGCGCGa---CUCAC-UGGcaac -5'
21231 5' -57.8 NC_004778.3 + 64297 1.1 0.001661
Target:  5'- cGGGCGCGACGCGCUGAGUGACCGUUGc -3'
miRNA:   3'- -CCCGCGCUGCGCGACUCACUGGCAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.