miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21232 3' -58.2 NC_004778.3 + 111917 0.66 0.794643
Target:  5'- uUGGCCCaauggcGCGCUGUgcgUGAucGUGCAg- -3'
miRNA:   3'- cACCGGG------CGCGGCA---ACUuuCGCGUgc -5'
21232 3' -58.2 NC_004778.3 + 124724 0.66 0.785538
Target:  5'- uUGcGCgCGCGCCuacgUGAcucGGCGCGCGc -3'
miRNA:   3'- cAC-CGgGCGCGGca--ACUu--UCGCGUGC- -5'
21232 3' -58.2 NC_004778.3 + 44138 0.66 0.785538
Target:  5'- -cGG-CCGCG-CGUUGGGcGGCGCGCc -3'
miRNA:   3'- caCCgGGCGCgGCAACUU-UCGCGUGc -5'
21232 3' -58.2 NC_004778.3 + 124493 0.66 0.785538
Target:  5'- -aGGCCCGCGCCcGUgcgucGAGU-CACGu -3'
miRNA:   3'- caCCGGGCGCGG-CAacu--UUCGcGUGC- -5'
21232 3' -58.2 NC_004778.3 + 77367 0.66 0.785538
Target:  5'- -cGcGCCgCGCGCUGgUGcAAuGCGCACGc -3'
miRNA:   3'- caC-CGG-GCGCGGCaAC-UUuCGCGUGC- -5'
21232 3' -58.2 NC_004778.3 + 20387 0.66 0.776295
Target:  5'- cGUGGUCCaacUGCCGgc--AGGCGCACa -3'
miRNA:   3'- -CACCGGGc--GCGGCaacuUUCGCGUGc -5'
21232 3' -58.2 NC_004778.3 + 28127 0.66 0.776295
Target:  5'- -cGuGUUCGCGCUGc--GAAGCGCACGc -3'
miRNA:   3'- caC-CGGGCGCGGCaacUUUCGCGUGC- -5'
21232 3' -58.2 NC_004778.3 + 79347 0.66 0.776295
Target:  5'- -cGGCCCcCGCCGUgguauaucGAucGCGCGg- -3'
miRNA:   3'- caCCGGGcGCGGCAa-------CUuuCGCGUgc -5'
21232 3' -58.2 NC_004778.3 + 63456 0.66 0.766923
Target:  5'- cUGGCCCuggGCGuUCGgcGAAAGCGCcuucuucggcGCGg -3'
miRNA:   3'- cACCGGG---CGC-GGCaaCUUUCGCG----------UGC- -5'
21232 3' -58.2 NC_004778.3 + 61631 0.66 0.766923
Target:  5'- uUGGCgCCGCGCagcc---AGCGCGCGc -3'
miRNA:   3'- cACCG-GGCGCGgcaacuuUCGCGUGC- -5'
21232 3' -58.2 NC_004778.3 + 95763 0.66 0.766923
Target:  5'- -cGGCCCuCGCCGggaaaAAAGCaCACGg -3'
miRNA:   3'- caCCGGGcGCGGCaac--UUUCGcGUGC- -5'
21232 3' -58.2 NC_004778.3 + 31247 0.66 0.757432
Target:  5'- cGUGGCgcgcgcaccUCGCGCCGa-GAAAcuugcguucGCGCGCGa -3'
miRNA:   3'- -CACCG---------GGCGCGGCaaCUUU---------CGCGUGC- -5'
21232 3' -58.2 NC_004778.3 + 57265 0.66 0.757432
Target:  5'- -gGGCCCagcacCGCCGUaaaguUG-GAGUGCGCGu -3'
miRNA:   3'- caCCGGGc----GCGGCA-----ACuUUCGCGUGC- -5'
21232 3' -58.2 NC_004778.3 + 30741 0.67 0.738128
Target:  5'- cUGGCCguaCGUGCUcUUGGAucGGUGCACGc -3'
miRNA:   3'- cACCGG---GCGCGGcAACUU--UCGCGUGC- -5'
21232 3' -58.2 NC_004778.3 + 35984 0.67 0.738128
Target:  5'- cUGGCCCccaagGCGCuUGUUGGugcGGCGC-CGg -3'
miRNA:   3'- cACCGGG-----CGCG-GCAACUu--UCGCGuGC- -5'
21232 3' -58.2 NC_004778.3 + 98052 0.67 0.727348
Target:  5'- aUGGCgguugaaCCGCuGCCGUcgaUGAuGGCGUACa -3'
miRNA:   3'- cACCG-------GGCG-CGGCA---ACUuUCGCGUGc -5'
21232 3' -58.2 NC_004778.3 + 37805 0.67 0.718455
Target:  5'- -aGGa-CGCGCgGUUGGGcgucucaaacAGCGCGCGg -3'
miRNA:   3'- caCCggGCGCGgCAACUU----------UCGCGUGC- -5'
21232 3' -58.2 NC_004778.3 + 8742 0.67 0.718455
Target:  5'- --cGCCgGCGCCGU----GGCGCGCc -3'
miRNA:   3'- cacCGGgCGCGGCAacuuUCGCGUGc -5'
21232 3' -58.2 NC_004778.3 + 121839 0.67 0.708503
Target:  5'- -gGGCCUGCa-CGU--GAAGCGCACGc -3'
miRNA:   3'- caCCGGGCGcgGCAacUUUCGCGUGC- -5'
21232 3' -58.2 NC_004778.3 + 7162 0.67 0.708503
Target:  5'- -cGGCgCGCcgagcacuaGCuCGUUGAGguGGCGCACa -3'
miRNA:   3'- caCCGgGCG---------CG-GCAACUU--UCGCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.