miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21232 5' -55.6 NC_004778.3 + 24258 0.66 0.908639
Target:  5'- aACGCcCGUacUCGAaaaaGCGCGGUCGGc -3'
miRNA:   3'- gUGCGuGCAguAGUUc---CGCGCCAGCU- -5'
21232 5' -55.6 NC_004778.3 + 19352 0.66 0.908639
Target:  5'- --aGCACGUCAcCAAGGUGCccgcgCGAc -3'
miRNA:   3'- gugCGUGCAGUaGUUCCGCGcca--GCU- -5'
21232 5' -55.6 NC_004778.3 + 37807 0.66 0.908639
Target:  5'- gACGCGCGguugggCGUCucaaacAGcGCGCGG-CGAc -3'
miRNA:   3'- gUGCGUGCa-----GUAGu-----UC-CGCGCCaGCU- -5'
21232 5' -55.6 NC_004778.3 + 29798 0.66 0.904917
Target:  5'- cCGCGUcucgGCGUCGaCAacguguacaauugacAGGuCGUGGUCGAg -3'
miRNA:   3'- -GUGCG----UGCAGUaGU---------------UCC-GCGCCAGCU- -5'
21232 5' -55.6 NC_004778.3 + 42488 0.66 0.902388
Target:  5'- aACGUugGggGUUGAgggcGGCGUGGUCGGc -3'
miRNA:   3'- gUGCGugCagUAGUU----CCGCGCCAGCU- -5'
21232 5' -55.6 NC_004778.3 + 4373 0.66 0.902388
Target:  5'- aAUGCACGccgaccagCAUCGucGGGCaGCGGUCc- -3'
miRNA:   3'- gUGCGUGCa-------GUAGU--UCCG-CGCCAGcu -5'
21232 5' -55.6 NC_004778.3 + 62635 0.66 0.895239
Target:  5'- uGCGCcagaacaGCGUgGUCGAGGC--GGUCGGu -3'
miRNA:   3'- gUGCG-------UGCAgUAGUUCCGcgCCAGCU- -5'
21232 5' -55.6 NC_004778.3 + 32433 0.66 0.88918
Target:  5'- cCACGCACGgcugCAUCAGcaugcGGCGCaGcCGc -3'
miRNA:   3'- -GUGCGUGCa---GUAGUU-----CCGCGcCaGCu -5'
21232 5' -55.6 NC_004778.3 + 16305 0.66 0.88918
Target:  5'- aCGCGCACGUCG-CAcaGCGa-GUCGAa -3'
miRNA:   3'- -GUGCGUGCAGUaGUucCGCgcCAGCU- -5'
21232 5' -55.6 NC_004778.3 + 24060 0.66 0.882228
Target:  5'- aACGCcCGUacUCGAaaaGCGCGGUCGGc -3'
miRNA:   3'- gUGCGuGCAguAGUUc--CGCGCCAGCU- -5'
21232 5' -55.6 NC_004778.3 + 23863 0.66 0.882228
Target:  5'- aACGCcCGUacUCGAaaaGCGCGGUCGGc -3'
miRNA:   3'- gUGCGuGCAguAGUUc--CGCGCCAGCU- -5'
21232 5' -55.6 NC_004778.3 + 91883 0.67 0.870639
Target:  5'- cCACGCAUGUCAaCAcguaaaaaacaacaaAGugguucGCGUGGUCGGc -3'
miRNA:   3'- -GUGCGUGCAGUaGU---------------UC------CGCGCCAGCU- -5'
21232 5' -55.6 NC_004778.3 + 15620 0.67 0.867654
Target:  5'- gAUGCGCGgCAgCAcuuuGGCGUGGUCGc -3'
miRNA:   3'- gUGCGUGCaGUaGUu---CCGCGCCAGCu -5'
21232 5' -55.6 NC_004778.3 + 120109 0.67 0.867654
Target:  5'- -cUGCGCGUCGUCAcacAGGUucacguGCGG-CGGa -3'
miRNA:   3'- guGCGUGCAGUAGU---UCCG------CGCCaGCU- -5'
21232 5' -55.6 NC_004778.3 + 87693 0.67 0.860042
Target:  5'- gGCGCGCGgcgagCuUUAAGGuCGgGGUUGAu -3'
miRNA:   3'- gUGCGUGCa----GuAGUUCC-GCgCCAGCU- -5'
21232 5' -55.6 NC_004778.3 + 95424 0.67 0.85222
Target:  5'- aGCaCGCGUUAgCGAcGGUGCGGUCGc -3'
miRNA:   3'- gUGcGUGCAGUaGUU-CCGCGCCAGCu -5'
21232 5' -55.6 NC_004778.3 + 58270 0.67 0.840931
Target:  5'- --gGCGCGUUuaacucguggggcUCGAGGCGCGG-CGGc -3'
miRNA:   3'- gugCGUGCAGu------------AGUUCCGCGCCaGCU- -5'
21232 5' -55.6 NC_004778.3 + 128400 0.68 0.810217
Target:  5'- aACGUACGUaCAggcUCAGgcgauuuguGGUGCGGUUGAg -3'
miRNA:   3'- gUGCGUGCA-GU---AGUU---------CCGCGCCAGCU- -5'
21232 5' -55.6 NC_004778.3 + 52732 0.68 0.801291
Target:  5'- aGCGCGCGa-AUCAAGGCGCuGGaaCGGu -3'
miRNA:   3'- gUGCGUGCagUAGUUCCGCG-CCa-GCU- -5'
21232 5' -55.6 NC_004778.3 + 2393 0.68 0.801291
Target:  5'- gGCGUACGUCcgC-GGGCGUGacguuucuGUCGAu -3'
miRNA:   3'- gUGCGUGCAGuaGuUCCGCGC--------CAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.