miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21233 5' -52.4 NC_004778.3 + 43105 0.66 0.979493
Target:  5'- -aCUGCAucuuGGUCGGGCGGaugGGCCu -3'
miRNA:   3'- caGACGUuugcCCAGCUUGUCg--CUGG- -5'
21233 5' -52.4 NC_004778.3 + 121891 0.66 0.977111
Target:  5'- ---cGCAAAuCGGGUCGcuaaaccagcuACGGCGcGCCg -3'
miRNA:   3'- cagaCGUUU-GCCCAGCu----------UGUCGC-UGG- -5'
21233 5' -52.4 NC_004778.3 + 89160 0.66 0.974532
Target:  5'- aUCgGCAcuAGCGGGUUccaguacacAACGGUGGCCg -3'
miRNA:   3'- cAGaCGU--UUGCCCAGc--------UUGUCGCUGG- -5'
21233 5' -52.4 NC_004778.3 + 88652 0.66 0.974532
Target:  5'- -aCUGCAGacuuGCGcGGUUGA-CGGUGGCg -3'
miRNA:   3'- caGACGUU----UGC-CCAGCUuGUCGCUGg -5'
21233 5' -52.4 NC_004778.3 + 60008 0.66 0.971748
Target:  5'- ---aGCAAaaauACGGaGUCGGccGCGGaCGACCu -3'
miRNA:   3'- cagaCGUU----UGCC-CAGCU--UGUC-GCUGG- -5'
21233 5' -52.4 NC_004778.3 + 16634 0.66 0.971748
Target:  5'- cGUUgGCAAACGGuGUagaugucugcaUGAGCAGCGAa- -3'
miRNA:   3'- -CAGaCGUUUGCC-CA-----------GCUUGUCGCUgg -5'
21233 5' -52.4 NC_004778.3 + 58274 0.66 0.971748
Target:  5'- cGUCgGCGcguuuaacucGugGGGcUCGAggcGCGGCGGCg -3'
miRNA:   3'- -CAGaCGU----------UugCCC-AGCU---UGUCGCUGg -5'
21233 5' -52.4 NC_004778.3 + 28600 0.66 0.965535
Target:  5'- cGUUUGCGcgUGGcGUCGAcguGCggggaAGUGACCa -3'
miRNA:   3'- -CAGACGUuuGCC-CAGCU---UG-----UCGCUGG- -5'
21233 5' -52.4 NC_004778.3 + 7318 0.67 0.962093
Target:  5'- ---cGCGAACGGGU--AACAGCGGa- -3'
miRNA:   3'- cagaCGUUUGCCCAgcUUGUCGCUgg -5'
21233 5' -52.4 NC_004778.3 + 34134 0.67 0.961736
Target:  5'- aGUC-GCAgcgcgcguacgacGACGcGGUCGccGGCGGCGACa -3'
miRNA:   3'- -CAGaCGU-------------UUGC-CCAGC--UUGUCGCUGg -5'
21233 5' -52.4 NC_004778.3 + 34444 0.67 0.954509
Target:  5'- -gCUGUAcACGGGcacgcugcgcgUCGAGgAGCGcACCg -3'
miRNA:   3'- caGACGUuUGCCC-----------AGCUUgUCGC-UGG- -5'
21233 5' -52.4 NC_004778.3 + 35962 0.67 0.950357
Target:  5'- --gUGCGGcgcCGGGUCGGGCAGCcGAa- -3'
miRNA:   3'- cagACGUUu--GCCCAGCUUGUCG-CUgg -5'
21233 5' -52.4 NC_004778.3 + 21253 0.67 0.950357
Target:  5'- aGUCcGCGcGGCaGGUUGAGCAGaUGGCCc -3'
miRNA:   3'- -CAGaCGU-UUGcCCAGCUUGUC-GCUGG- -5'
21233 5' -52.4 NC_004778.3 + 111184 0.67 0.945959
Target:  5'- -aCUGUAcccaAAUGGGUCccACAGCG-CCa -3'
miRNA:   3'- caGACGU----UUGCCCAGcuUGUCGCuGG- -5'
21233 5' -52.4 NC_004778.3 + 29180 0.68 0.941313
Target:  5'- -gCUGCc-ACGGGUCGucgcuCGGCaGCCa -3'
miRNA:   3'- caGACGuuUGCCCAGCuu---GUCGcUGG- -5'
21233 5' -52.4 NC_004778.3 + 39112 0.68 0.936415
Target:  5'- ---cGCAAguACGuGGUgCGcGGCGGCGACCa -3'
miRNA:   3'- cagaCGUU--UGC-CCA-GC-UUGUCGCUGG- -5'
21233 5' -52.4 NC_004778.3 + 93881 0.68 0.931265
Target:  5'- aGUCUaGCu-GCGGGUUGGGCcGC-ACCa -3'
miRNA:   3'- -CAGA-CGuuUGCCCAGCUUGuCGcUGG- -5'
21233 5' -52.4 NC_004778.3 + 12160 0.68 0.931265
Target:  5'- uGUUUGUgauAAGCGGcGgCGcGGCAGCGGCCu -3'
miRNA:   3'- -CAGACG---UUUGCC-CaGC-UUGUCGCUGG- -5'
21233 5' -52.4 NC_004778.3 + 38383 0.68 0.920204
Target:  5'- uUCU-UAcGCGGGUCG-GCGGCGugCa -3'
miRNA:   3'- cAGAcGUuUGCCCAGCuUGUCGCugG- -5'
21233 5' -52.4 NC_004778.3 + 38267 0.69 0.88815
Target:  5'- -aCUGCGGACG---CGGACGGCGugCg -3'
miRNA:   3'- caGACGUUUGCccaGCUUGUCGCugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.