Results 61 - 80 of 86 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21234 | 3' | -49.7 | NC_004778.3 | + | 7167 | 0.69 | 0.971975 |
Target: 5'- cGCCGA-GCACuagcUCguuGAGGUGGCGCa -3' miRNA: 3'- -CGGCUgCGUGc---AGau-UUCUAUCGUGa -5' |
|||||||
21234 | 3' | -49.7 | NC_004778.3 | + | 68139 | 0.69 | 0.968922 |
Target: 5'- gGCCGuacucuCGCACGUCggc-GAcGGCGCa -3' miRNA: 3'- -CGGCu-----GCGUGCAGauuuCUaUCGUGa -5' |
|||||||
21234 | 3' | -49.7 | NC_004778.3 | + | 49440 | 0.68 | 0.979833 |
Target: 5'- cGCCGACGCAgCcUCUugcGAgGGCACg -3' miRNA: 3'- -CGGCUGCGU-GcAGAuuuCUaUCGUGa -5' |
|||||||
21234 | 3' | -49.7 | NC_004778.3 | + | 62560 | 0.68 | 0.982047 |
Target: 5'- uGCCGGCGUACGcgcaaaaguUCUAcaacGggGGCGCUa -3' miRNA: 3'- -CGGCUGCGUGC---------AGAUuu--CuaUCGUGA- -5' |
|||||||
21234 | 3' | -49.7 | NC_004778.3 | + | 33044 | 0.68 | 0.985921 |
Target: 5'- uGCUGGCGCACuuuuuGUUcGAAGAgagccUGGCGCa -3' miRNA: 3'- -CGGCUGCGUG-----CAGaUUUCU-----AUCGUGa -5' |
|||||||
21234 | 3' | -49.7 | NC_004778.3 | + | 104354 | 0.68 | 0.982047 |
Target: 5'- gGCCGGCGUACGUgacucGGUcGGCGCg -3' miRNA: 3'- -CGGCUGCGUGCAgauuuCUA-UCGUGa -5' |
|||||||
21234 | 3' | -49.7 | NC_004778.3 | + | 63334 | 0.68 | 0.984073 |
Target: 5'- aGCCG-CGCACGUUUcAAAcGGU-GCACa -3' miRNA: 3'- -CGGCuGCGUGCAGA-UUU-CUAuCGUGa -5' |
|||||||
21234 | 3' | -49.7 | NC_004778.3 | + | 38610 | 0.68 | 0.979833 |
Target: 5'- cGCCGGguuCGCGCGUUacAAGugcgAGCGCa -3' miRNA: 3'- -CGGCU---GCGUGCAGauUUCua--UCGUGa -5' |
|||||||
21234 | 3' | -49.7 | NC_004778.3 | + | 31616 | 0.67 | 0.9876 |
Target: 5'- aUCGGCggugguauuggGCGCGUCcAAAGAUcGCACUg -3' miRNA: 3'- cGGCUG-----------CGUGCAGaUUUCUAuCGUGA- -5' |
|||||||
21234 | 3' | -49.7 | NC_004778.3 | + | 60336 | 0.67 | 0.98912 |
Target: 5'- -gCGGCGUGcCGUUgcaAAAGGUGGCGCg -3' miRNA: 3'- cgGCUGCGU-GCAGa--UUUCUAUCGUGa -5' |
|||||||
21234 | 3' | -49.7 | NC_004778.3 | + | 22565 | 0.67 | 0.99049 |
Target: 5'- uGCCGACGCGCccgUAccGcUGGCGCUa -3' miRNA: 3'- -CGGCUGCGUGcagAUuuCuAUCGUGA- -5' |
|||||||
21234 | 3' | -49.7 | NC_004778.3 | + | 14024 | 0.67 | 0.99049 |
Target: 5'- uGUCGAaGCGCa-CUGAAGGUAGUGCUu -3' miRNA: 3'- -CGGCUgCGUGcaGAUUUCUAUCGUGA- -5' |
|||||||
21234 | 3' | -49.7 | NC_004778.3 | + | 33537 | 0.67 | 0.991722 |
Target: 5'- gGuuGG-GCGCGUCcAAAGAcGGCGCg -3' miRNA: 3'- -CggCUgCGUGCAGaUUUCUaUCGUGa -5' |
|||||||
21234 | 3' | -49.7 | NC_004778.3 | + | 44445 | 0.67 | 0.9876 |
Target: 5'- uGCCGACGCAUGUUcAAAcacuuUAGUugUa -3' miRNA: 3'- -CGGCUGCGUGCAGaUUUcu---AUCGugA- -5' |
|||||||
21234 | 3' | -49.7 | NC_004778.3 | + | 106869 | 0.67 | 0.98912 |
Target: 5'- cGCCGACGCccugGCGUUaaagccgagGAGGAUcagacaaccgAGCGCUu -3' miRNA: 3'- -CGGCUGCG----UGCAGa--------UUUCUA----------UCGUGA- -5' |
|||||||
21234 | 3' | -49.7 | NC_004778.3 | + | 112224 | 0.67 | 0.98912 |
Target: 5'- gGCCG-CGCG-GUCcAGGuGAUAGCACg -3' miRNA: 3'- -CGGCuGCGUgCAGaUUU-CUAUCGUGa -5' |
|||||||
21234 | 3' | -49.7 | NC_004778.3 | + | 80834 | 0.67 | 0.992823 |
Target: 5'- aGCCGGC-CAUGUacgcgugccUUAAAGAgUGGCACa -3' miRNA: 3'- -CGGCUGcGUGCA---------GAUUUCU-AUCGUGa -5' |
|||||||
21234 | 3' | -49.7 | NC_004778.3 | + | 4431 | 0.67 | 0.992823 |
Target: 5'- gGCCGACGCAauuauuCG-CUucGAAGA-GGCGCg -3' miRNA: 3'- -CGGCUGCGU------GCaGA--UUUCUaUCGUGa -5' |
|||||||
21234 | 3' | -49.7 | NC_004778.3 | + | 20105 | 0.66 | 0.993712 |
Target: 5'- cGCUGACGCACGUCacuuguuuuuccAGUACg -3' miRNA: 3'- -CGGCUGCGUGCAGauuucua-----UCGUGa -5' |
|||||||
21234 | 3' | -49.7 | NC_004778.3 | + | 60447 | 0.66 | 0.993805 |
Target: 5'- cGUCGACGC-CGUUUAAAGAcuuccgccGGCuGCUg -3' miRNA: 3'- -CGGCUGCGuGCAGAUUUCUa-------UCG-UGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home