miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21234 3' -49.7 NC_004778.3 + 60336 0.67 0.98912
Target:  5'- -gCGGCGUGcCGUUgcaAAAGGUGGCGCg -3'
miRNA:   3'- cgGCUGCGU-GCAGa--UUUCUAUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 60447 0.66 0.993805
Target:  5'- cGUCGACGC-CGUUUAAAGAcuuccgccGGCuGCUg -3'
miRNA:   3'- -CGGCUGCGuGCAGAUUUCUa-------UCG-UGA- -5'
21234 3' -49.7 NC_004778.3 + 61373 0.69 0.962121
Target:  5'- cGCCGGCGCGuCGUCgcug---AGCGCc -3'
miRNA:   3'- -CGGCUGCGU-GCAGauuucuaUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 62560 0.68 0.982047
Target:  5'- uGCCGGCGUACGcgcaaaaguUCUAcaacGggGGCGCUa -3'
miRNA:   3'- -CGGCUGCGUGC---------AGAUuu--CuaUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 63334 0.68 0.984073
Target:  5'- aGCCG-CGCACGUUUcAAAcGGU-GCACa -3'
miRNA:   3'- -CGGCuGCGUGCAGA-UUU-CUAuCGUGa -5'
21234 3' -49.7 NC_004778.3 + 64864 0.69 0.961756
Target:  5'- aCCGACGUACGUUUGAauaugccAGcgGGCAa- -3'
miRNA:   3'- cGGCUGCGUGCAGAUU-------UCuaUCGUga -5'
21234 3' -49.7 NC_004778.3 + 66628 1.11 0.007944
Target:  5'- cGCCGACGCACGUCUAAAGAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 66693 1.06 0.015098
Target:  5'- cGCUGACGCACGUCUAAAGAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 66758 1.06 0.015098
Target:  5'- cGCUGACGCACGUCUAAAGAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 66824 1.02 0.02944
Target:  5'- cGCCGACGCACGUCcAAAGAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGaUUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 66890 1.02 0.02944
Target:  5'- cGCCGACGCACGUCcAAAGAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGaUUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 66953 0.91 0.135673
Target:  5'- cGCCGACGCACGU---AAGAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAgauUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 67019 0.81 0.4688
Target:  5'- -aCGGCGCcgACGcCUAAAGAUAGCACUc -3'
miRNA:   3'- cgGCUGCG--UGCaGAUUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 68139 0.69 0.968922
Target:  5'- gGCCGuacucuCGCACGUCggc-GAcGGCGCa -3'
miRNA:   3'- -CGGCu-----GCGUGCAGauuuCUaUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 69775 0.66 0.995444
Target:  5'- aUCGAUGUAgCGcUCUGGAGGcgUGGCGCa -3'
miRNA:   3'- cGGCUGCGU-GC-AGAUUUCU--AUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 74477 0.71 0.912903
Target:  5'- uUUGGCGCACGUCguAAGGUaucAGCGCg -3'
miRNA:   3'- cGGCUGCGUGCAGauUUCUA---UCGUGa -5'
21234 3' -49.7 NC_004778.3 + 80834 0.67 0.992823
Target:  5'- aGCCGGC-CAUGUacgcgugccUUAAAGAgUGGCACa -3'
miRNA:   3'- -CGGCUGcGUGCA---------GAUUUCU-AUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 90239 0.71 0.935738
Target:  5'- cGCUGACGCACGugcacaaaUCUugcauGAUAGCAg- -3'
miRNA:   3'- -CGGCUGCGUGC--------AGAuuu--CUAUCGUga -5'
21234 3' -49.7 NC_004778.3 + 95926 0.74 0.811092
Target:  5'- gGCCGGCGCGCuGcCgcgcGGAUAGCGCc -3'
miRNA:   3'- -CGGCUGCGUG-CaGauu-UCUAUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 99267 0.88 0.182389
Target:  5'- cGCUGACGCACGUau-AAGAUAGCGCUc -3'
miRNA:   3'- -CGGCUGCGUGCAgauUUCUAUCGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.