Results 61 - 80 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21234 | 3' | -49.7 | NC_004778.3 | + | 99378 | 0.92 | 0.119609 |
Target: 5'- cGCCGACGCACGUCUAAAGAUAaccuuguuuuucgucGUACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUUUCUAU---------------CGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 99436 | 0.82 | 0.402571 |
Target: 5'- cGCUcACGCACGUCUAAAaAUAGCACa -3' miRNA: 3'- -CGGcUGCGUGCAGAUUUcUAUCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 99607 | 0.8 | 0.478716 |
Target: 5'- cGCUGACGCACGUCUAAAaAUAaCACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUUUcUAUcGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 99673 | 0.84 | 0.334565 |
Target: 5'- cGCUGGCGCAUGUUUAAAaAUAGCACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUUUcUAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 99739 | 0.84 | 0.334565 |
Target: 5'- cGCUGGCGCAUGUUUAAAaAUAGCACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUUUcUAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 99804 | 0.85 | 0.289327 |
Target: 5'- cGCUGACGCAUGUUUAAAaAUAGCACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUUUcUAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 99870 | 0.85 | 0.289327 |
Target: 5'- cGCUGACGCAUGUUUAAAaAUAGCACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUUUcUAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 99936 | 0.89 | 0.172948 |
Target: 5'- cGCUGGCGCAUGUCUAAAaAUAGCACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUUUcUAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 104354 | 0.68 | 0.982047 |
Target: 5'- gGCCGGCGUACGUgacucGGUcGGCGCg -3' miRNA: 3'- -CGGCUGCGUGCAgauuuCUA-UCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 106869 | 0.67 | 0.98912 |
Target: 5'- cGCCGACGCccugGCGUUaaagccgagGAGGAUcagacaaccgAGCGCUu -3' miRNA: 3'- -CGGCUGCG----UGCAGa--------UUUCUA----------UCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 111298 | 0.69 | 0.968922 |
Target: 5'- cGCCGugGUgaGCGUUUu--GAUGGCAa- -3' miRNA: 3'- -CGGCugCG--UGCAGAuuuCUAUCGUga -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 112224 | 0.67 | 0.98912 |
Target: 5'- gGCCG-CGCG-GUCcAGGuGAUAGCACg -3' miRNA: 3'- -CGGCuGCGUgCAGaUUU-CUAUCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 113887 | 0.71 | 0.930428 |
Target: 5'- gGCCGG-GCGCGUCgggcGAAGGcGGCGCc -3' miRNA: 3'- -CGGCUgCGUGCAGa---UUUCUaUCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 115145 | 0.66 | 0.995444 |
Target: 5'- cGCCaGCGCGgGUCaUAAuguGGUGGUGCUc -3' miRNA: 3'- -CGGcUGCGUgCAG-AUUu--CUAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 122386 | 0.82 | 0.420891 |
Target: 5'- gGUCGGCGC-CGUCUAAAGAUAaCACUa -3' miRNA: 3'- -CGGCUGCGuGCAGAUUUCUAUcGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 122446 | 1.06 | 0.015098 |
Target: 5'- cGCUGACGCACGUCUAAAGAUAGCACUu -3' miRNA: 3'- -CGGCUGCGUGCAGAUUUCUAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 122599 | 0.94 | 0.08713 |
Target: 5'- cGCCGACGCACGUCUAAAGAUAaaACUa -3' miRNA: 3'- -CGGCUGCGUGCAGAUUUCUAUcgUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 122692 | 0.84 | 0.318931 |
Target: 5'- cGCUGACGCACGUCUA----UAGCACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUuucuAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 122754 | 0.84 | 0.318931 |
Target: 5'- cGCUGACGCACGUCUA----UAGCACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUuucuAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 122793 | 0.69 | 0.968922 |
Target: 5'- cGCUGACGCAUGUCU------GGCAUUu -3' miRNA: 3'- -CGGCUGCGUGCAGAuuucuaUCGUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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