Results 81 - 86 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21234 | 3' | -49.7 | NC_004778.3 | + | 122802 | 0.79 | 0.561276 |
Target: 5'- cGCUGACGCACGUUUA----UAGCACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUuucuAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 122849 | 0.69 | 0.974806 |
Target: 5'- cGuuGACGCAUGUCUAAGGGa------ -3' miRNA: 3'- -CggCUGCGUGCAGAUUUCUaucguga -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 122867 | 0.98 | 0.04942 |
Target: 5'- cGCCGACGCA-GUCUAAAGAUAGCACUu -3' miRNA: 3'- -CGGCUGCGUgCAGAUUUCUAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 124947 | 0.76 | 0.721854 |
Target: 5'- cGCUGACGCAUGUCUGA----GGUACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUUucuaUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 125005 | 0.66 | 0.99612 |
Target: 5'- -aUGACGCAUGUCUGA----GGCAUUc -3' miRNA: 3'- cgGCUGCGUGCAGAUUucuaUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 125069 | 0.76 | 0.721854 |
Target: 5'- cGCUGACGCAUGUCUGA----GGUACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUUucuaUCGUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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