Results 21 - 40 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21234 | 3' | -49.7 | NC_004778.3 | + | 99804 | 0.85 | 0.289327 |
Target: 5'- cGCUGACGCAUGUUUAAAaAUAGCACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUUUcUAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 99739 | 0.84 | 0.334565 |
Target: 5'- cGCUGGCGCAUGUUUAAAaAUAGCACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUUUcUAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 99673 | 0.84 | 0.334565 |
Target: 5'- cGCUGGCGCAUGUUUAAAaAUAGCACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUUUcUAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 99607 | 0.8 | 0.478716 |
Target: 5'- cGCUGACGCACGUCUAAAaAUAaCACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUUUcUAUcGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 99436 | 0.82 | 0.402571 |
Target: 5'- cGCUcACGCACGUCUAAAaAUAGCACa -3' miRNA: 3'- -CGGcUGCGUGCAGAUUUcUAUCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 99378 | 0.92 | 0.119609 |
Target: 5'- cGCCGACGCACGUCUAAAGAUAaccuuguuuuucgucGUACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUUUCUAU---------------CGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 99267 | 0.88 | 0.182389 |
Target: 5'- cGCUGACGCACGUau-AAGAUAGCGCUc -3' miRNA: 3'- -CGGCUGCGUGCAgauUUCUAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 95926 | 0.74 | 0.811092 |
Target: 5'- gGCCGGCGCGCuGcCgcgcGGAUAGCGCc -3' miRNA: 3'- -CGGCUGCGUG-CaGauu-UCUAUCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 90239 | 0.71 | 0.935738 |
Target: 5'- cGCUGACGCACGugcacaaaUCUugcauGAUAGCAg- -3' miRNA: 3'- -CGGCUGCGUGC--------AGAuuu--CUAUCGUga -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 80834 | 0.67 | 0.992823 |
Target: 5'- aGCCGGC-CAUGUacgcgugccUUAAAGAgUGGCACa -3' miRNA: 3'- -CGGCUGcGUGCA---------GAUUUCU-AUCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 74477 | 0.71 | 0.912903 |
Target: 5'- uUUGGCGCACGUCguAAGGUaucAGCGCg -3' miRNA: 3'- cGGCUGCGUGCAGauUUCUA---UCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 69775 | 0.66 | 0.995444 |
Target: 5'- aUCGAUGUAgCGcUCUGGAGGcgUGGCGCa -3' miRNA: 3'- cGGCUGCGU-GC-AGAUUUCU--AUCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 68139 | 0.69 | 0.968922 |
Target: 5'- gGCCGuacucuCGCACGUCggc-GAcGGCGCa -3' miRNA: 3'- -CGGCu-----GCGUGCAGauuuCUaUCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 67019 | 0.81 | 0.4688 |
Target: 5'- -aCGGCGCcgACGcCUAAAGAUAGCACUc -3' miRNA: 3'- cgGCUGCG--UGCaGAUUUCUAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 66953 | 0.91 | 0.135673 |
Target: 5'- cGCCGACGCACGU---AAGAUAGCACUc -3' miRNA: 3'- -CGGCUGCGUGCAgauUUCUAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 66890 | 1.02 | 0.02944 |
Target: 5'- cGCCGACGCACGUCcAAAGAUAGCACUc -3' miRNA: 3'- -CGGCUGCGUGCAGaUUUCUAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 66824 | 1.02 | 0.02944 |
Target: 5'- cGCCGACGCACGUCcAAAGAUAGCACUc -3' miRNA: 3'- -CGGCUGCGUGCAGaUUUCUAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 66758 | 1.06 | 0.015098 |
Target: 5'- cGCUGACGCACGUCUAAAGAUAGCACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUUUCUAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 66693 | 1.06 | 0.015098 |
Target: 5'- cGCUGACGCACGUCUAAAGAUAGCACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUUUCUAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 66628 | 1.11 | 0.007944 |
Target: 5'- cGCCGACGCACGUCUAAAGAUAGCACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUUUCUAUCGUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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