Results 41 - 60 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21234 | 3' | -49.7 | NC_004778.3 | + | 64864 | 0.69 | 0.961756 |
Target: 5'- aCCGACGUACGUUUGAauaugccAGcgGGCAa- -3' miRNA: 3'- cGGCUGCGUGCAGAUU-------UCuaUCGUga -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 63334 | 0.68 | 0.984073 |
Target: 5'- aGCCG-CGCACGUUUcAAAcGGU-GCACa -3' miRNA: 3'- -CGGCuGCGUGCAGA-UUU-CUAuCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 62560 | 0.68 | 0.982047 |
Target: 5'- uGCCGGCGUACGcgcaaaaguUCUAcaacGggGGCGCUa -3' miRNA: 3'- -CGGCUGCGUGC---------AGAUuu--CuaUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 61373 | 0.69 | 0.962121 |
Target: 5'- cGCCGGCGCGuCGUCgcug---AGCGCc -3' miRNA: 3'- -CGGCUGCGU-GCAGauuucuaUCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 60447 | 0.66 | 0.993805 |
Target: 5'- cGUCGACGC-CGUUUAAAGAcuuccgccGGCuGCUg -3' miRNA: 3'- -CGGCUGCGuGCAGAUUUCUa-------UCG-UGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 60336 | 0.67 | 0.98912 |
Target: 5'- -gCGGCGUGcCGUUgcaAAAGGUGGCGCg -3' miRNA: 3'- cgGCUGCGU-GCAGa--UUUCUAUCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 59169 | 0.72 | 0.906532 |
Target: 5'- cGCCGACGCAgaGUUUAAAaaaAGCACg -3' miRNA: 3'- -CGGCUGCGUg-CAGAUUUcuaUCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 51139 | 0.76 | 0.721854 |
Target: 5'- cGCCGGCGCGCGgCUGA----AGCACUu -3' miRNA: 3'- -CGGCUGCGUGCaGAUUucuaUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 49440 | 0.68 | 0.979833 |
Target: 5'- cGCCGACGCAgCcUCUugcGAgGGCACg -3' miRNA: 3'- -CGGCUGCGU-GcAGAuuuCUaUCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 46692 | 0.66 | 0.995444 |
Target: 5'- uGCaCGACGCACGUUUGgacaacaaaAAGAUcAGgACc -3' miRNA: 3'- -CG-GCUGCGUGCAGAU---------UUCUA-UCgUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 45221 | 0.77 | 0.647233 |
Target: 5'- cGCCGcuCGCGCG-CUGAuGGUAGCGCUc -3' miRNA: 3'- -CGGCu-GCGUGCaGAUUuCUAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 44867 | 0.69 | 0.96564 |
Target: 5'- gGCCuGCGaCAUGUCUuuGGAaacguUGGCGCUg -3' miRNA: 3'- -CGGcUGC-GUGCAGAuuUCU-----AUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 44445 | 0.67 | 0.9876 |
Target: 5'- uGCCGACGCAUGUUcAAAcacuuUAGUugUa -3' miRNA: 3'- -CGGCUGCGUGCAGaUUUcu---AUCGugA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 44141 | 0.7 | 0.940783 |
Target: 5'- cGCCGGcCGCGCGUU---GGGcGGCGCg -3' miRNA: 3'- -CGGCU-GCGUGCAGauuUCUaUCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 39205 | 0.7 | 0.950086 |
Target: 5'- aCCGAgUGgAUGgCUGAAGAUGGCACg -3' miRNA: 3'- cGGCU-GCgUGCaGAUUUCUAUCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 38610 | 0.68 | 0.979833 |
Target: 5'- cGCCGGguuCGCGCGUUacAAGugcgAGCGCa -3' miRNA: 3'- -CGGCU---GCGUGCAGauUUCua--UCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 36861 | 0.76 | 0.732256 |
Target: 5'- cGCCGGCgguGCGCGUCUu-GGcgAGCGCg -3' miRNA: 3'- -CGGCUG---CGUGCAGAuuUCuaUCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 35981 | 0.72 | 0.906532 |
Target: 5'- uGCCGACgGC-CGUCaacucguuGGGAUGGCACc -3' miRNA: 3'- -CGGCUG-CGuGCAGau------UUCUAUCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 33537 | 0.67 | 0.991722 |
Target: 5'- gGuuGG-GCGCGUCcAAAGAcGGCGCg -3' miRNA: 3'- -CggCUgCGUGCAGaUUUCUaUCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 33044 | 0.68 | 0.985921 |
Target: 5'- uGCUGGCGCACuuuuuGUUcGAAGAgagccUGGCGCa -3' miRNA: 3'- -CGGCUGCGUG-----CAGaUUUCU-----AUCGUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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