Results 41 - 60 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21234 | 3' | -49.7 | NC_004778.3 | + | 60336 | 0.67 | 0.98912 |
Target: 5'- -gCGGCGUGcCGUUgcaAAAGGUGGCGCg -3' miRNA: 3'- cgGCUGCGU-GCAGa--UUUCUAUCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 31616 | 0.67 | 0.9876 |
Target: 5'- aUCGGCggugguauuggGCGCGUCcAAAGAUcGCACUg -3' miRNA: 3'- cGGCUG-----------CGUGCAGaUUUCUAuCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 63334 | 0.68 | 0.984073 |
Target: 5'- aGCCG-CGCACGUUUcAAAcGGU-GCACa -3' miRNA: 3'- -CGGCuGCGUGCAGA-UUU-CUAuCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 62560 | 0.68 | 0.982047 |
Target: 5'- uGCCGGCGUACGcgcaaaaguUCUAcaacGggGGCGCUa -3' miRNA: 3'- -CGGCUGCGUGC---------AGAUuu--CuaUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 38610 | 0.68 | 0.979833 |
Target: 5'- cGCCGGguuCGCGCGUUacAAGugcgAGCGCa -3' miRNA: 3'- -CGGCU---GCGUGCAGauUUCua--UCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 17928 | 0.7 | 0.954349 |
Target: 5'- cGCCGGCGUcaGCuUCUaAGAGAUGcGCGCa -3' miRNA: 3'- -CGGCUGCG--UGcAGA-UUUCUAU-CGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 39205 | 0.7 | 0.950086 |
Target: 5'- aCCGAgUGgAUGgCUGAAGAUGGCACg -3' miRNA: 3'- cGGCU-GCgUGCaGAUUUCUAUCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 44141 | 0.7 | 0.940783 |
Target: 5'- cGCCGGcCGCGCGUU---GGGcGGCGCg -3' miRNA: 3'- -CGGCU-GCGUGCAGauuUCUaUCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 74477 | 0.71 | 0.912903 |
Target: 5'- uUUGGCGCACGUCguAAGGUaucAGCGCg -3' miRNA: 3'- cGGCUGCGUGCAGauUUCUA---UCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 22565 | 0.67 | 0.99049 |
Target: 5'- uGCCGACGCGCccgUAccGcUGGCGCUa -3' miRNA: 3'- -CGGCUGCGUGcagAUuuCuAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 14024 | 0.67 | 0.99049 |
Target: 5'- uGUCGAaGCGCa-CUGAAGGUAGUGCUu -3' miRNA: 3'- -CGGCUgCGUGcaGAUUUCUAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 33537 | 0.67 | 0.991722 |
Target: 5'- gGuuGG-GCGCGUCcAAAGAcGGCGCg -3' miRNA: 3'- -CggCUgCGUGCAGaUUUCUaUCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 21343 | 0.66 | 0.99612 |
Target: 5'- -aCGGCuGCACGUCcgccGGcgAGCACUu -3' miRNA: 3'- cgGCUG-CGUGCAGauu-UCuaUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 69775 | 0.66 | 0.995444 |
Target: 5'- aUCGAUGUAgCGcUCUGGAGGcgUGGCGCa -3' miRNA: 3'- cGGCUGCGU-GC-AGAUUUCU--AUCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 46692 | 0.66 | 0.995444 |
Target: 5'- uGCaCGACGCACGUUUGgacaacaaaAAGAUcAGgACc -3' miRNA: 3'- -CG-GCUGCGUGCAGAU---------UUCUA-UCgUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 9701 | 0.66 | 0.995372 |
Target: 5'- gGCCGGCGCGgCGUCguguuccaaaacGGCGCg -3' miRNA: 3'- -CGGCUGCGU-GCAGauuucua-----UCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 60447 | 0.66 | 0.993805 |
Target: 5'- cGUCGACGC-CGUUUAAAGAcuuccgccGGCuGCUg -3' miRNA: 3'- -CGGCUGCGuGCAGAUUUCUa-------UCG-UGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 20105 | 0.66 | 0.993712 |
Target: 5'- cGCUGACGCACGUCacuuguuuuuccAGUACg -3' miRNA: 3'- -CGGCUGCGUGCAGauuucua-----UCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 4431 | 0.67 | 0.992823 |
Target: 5'- gGCCGACGCAauuauuCG-CUucGAAGA-GGCGCg -3' miRNA: 3'- -CGGCUGCGU------GCaGA--UUUCUaUCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 80834 | 0.67 | 0.992823 |
Target: 5'- aGCCGGC-CAUGUacgcgugccUUAAAGAgUGGCACa -3' miRNA: 3'- -CGGCUGcGUGCA---------GAUUUCU-AUCGUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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