miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21234 3' -49.7 NC_004778.3 + 95926 0.74 0.811092
Target:  5'- gGCCGGCGCGCuGcCgcgcGGAUAGCGCc -3'
miRNA:   3'- -CGGCUGCGUG-CaGauu-UCUAUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 74477 0.71 0.912903
Target:  5'- uUUGGCGCACGUCguAAGGUaucAGCGCg -3'
miRNA:   3'- cGGCUGCGUGCAGauUUCUA---UCGUGa -5'
21234 3' -49.7 NC_004778.3 + 22565 0.67 0.99049
Target:  5'- uGCCGACGCGCccgUAccGcUGGCGCUa -3'
miRNA:   3'- -CGGCUGCGUGcagAUuuCuAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 9701 0.66 0.995372
Target:  5'- gGCCGGCGCGgCGUCguguuccaaaacGGCGCg -3'
miRNA:   3'- -CGGCUGCGU-GCAGauuucua-----UCGUGa -5'
21234 3' -49.7 NC_004778.3 + 20049 0.92 0.115082
Target:  5'- cGCCGACGCACGU---AAGAUAGCACUg -3'
miRNA:   3'- -CGGCUGCGUGCAgauUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 122802 0.79 0.561276
Target:  5'- cGCUGACGCACGUUUA----UAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUuucuAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 39205 0.7 0.950086
Target:  5'- aCCGAgUGgAUGgCUGAAGAUGGCACg -3'
miRNA:   3'- cGGCU-GCgUGCaGAUUUCUAUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 46692 0.66 0.995444
Target:  5'- uGCaCGACGCACGUUUGgacaacaaaAAGAUcAGgACc -3'
miRNA:   3'- -CG-GCUGCGUGCAGAU---------UUCUA-UCgUGa -5'
21234 3' -49.7 NC_004778.3 + 45221 0.77 0.647233
Target:  5'- cGCCGcuCGCGCG-CUGAuGGUAGCGCUc -3'
miRNA:   3'- -CGGCu-GCGUGCaGAUUuCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 69775 0.66 0.995444
Target:  5'- aUCGAUGUAgCGcUCUGGAGGcgUGGCGCa -3'
miRNA:   3'- cGGCUGCGU-GC-AGAUUUCU--AUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 44141 0.7 0.940783
Target:  5'- cGCCGGcCGCGCGUU---GGGcGGCGCg -3'
miRNA:   3'- -CGGCU-GCGUGCAGauuUCUaUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 36861 0.76 0.732256
Target:  5'- cGCCGGCgguGCGCGUCUu-GGcgAGCGCg -3'
miRNA:   3'- -CGGCUG---CGUGCAGAuuUCuaUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 62560 0.68 0.982047
Target:  5'- uGCCGGCGUACGcgcaaaaguUCUAcaacGggGGCGCUa -3'
miRNA:   3'- -CGGCUGCGUGC---------AGAUuu--CuaUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 60336 0.67 0.98912
Target:  5'- -gCGGCGUGcCGUUgcaAAAGGUGGCGCg -3'
miRNA:   3'- cgGCUGCGU-GCAGa--UUUCUAUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 80834 0.67 0.992823
Target:  5'- aGCCGGC-CAUGUacgcgugccUUAAAGAgUGGCACa -3'
miRNA:   3'- -CGGCUGcGUGCA---------GAUUUCU-AUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 60447 0.66 0.993805
Target:  5'- cGUCGACGC-CGUUUAAAGAcuuccgccGGCuGCUg -3'
miRNA:   3'- -CGGCUGCGuGCAGAUUUCUa-------UCG-UGA- -5'
21234 3' -49.7 NC_004778.3 + 66824 1.02 0.02944
Target:  5'- cGCCGACGCACGUCcAAAGAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGaUUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 122599 0.94 0.08713
Target:  5'- cGCCGACGCACGUCUAAAGAUAaaACUa -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUCUAUcgUGA- -5'
21234 3' -49.7 NC_004778.3 + 122754 0.84 0.318931
Target:  5'- cGCUGACGCACGUCUA----UAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUuucuAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 67019 0.81 0.4688
Target:  5'- -aCGGCGCcgACGcCUAAAGAUAGCACUc -3'
miRNA:   3'- cgGCUGCG--UGCaGAUUUCUAUCGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.