miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21234 3' -49.7 NC_004778.3 + 62560 0.68 0.982047
Target:  5'- uGCCGGCGUACGcgcaaaaguUCUAcaacGggGGCGCUa -3'
miRNA:   3'- -CGGCUGCGUGC---------AGAUuu--CuaUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 104354 0.68 0.982047
Target:  5'- gGCCGGCGUACGUgacucGGUcGGCGCg -3'
miRNA:   3'- -CGGCUGCGUGCAgauuuCUA-UCGUGa -5'
21234 3' -49.7 NC_004778.3 + 49440 0.68 0.979833
Target:  5'- cGCCGACGCAgCcUCUugcGAgGGCACg -3'
miRNA:   3'- -CGGCUGCGU-GcAGAuuuCUaUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 38610 0.68 0.979833
Target:  5'- cGCCGGguuCGCGCGUUacAAGugcgAGCGCa -3'
miRNA:   3'- -CGGCU---GCGUGCAGauUUCua--UCGUGa -5'
21234 3' -49.7 NC_004778.3 + 122849 0.69 0.974806
Target:  5'- cGuuGACGCAUGUCUAAGGGa------ -3'
miRNA:   3'- -CggCUGCGUGCAGAUUUCUaucguga -5'
21234 3' -49.7 NC_004778.3 + 7167 0.69 0.971975
Target:  5'- cGCCGA-GCACuagcUCguuGAGGUGGCGCa -3'
miRNA:   3'- -CGGCUgCGUGc---AGau-UUCUAUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 111298 0.69 0.968922
Target:  5'- cGCCGugGUgaGCGUUUu--GAUGGCAa- -3'
miRNA:   3'- -CGGCugCG--UGCAGAuuuCUAUCGUga -5'
21234 3' -49.7 NC_004778.3 + 68139 0.69 0.968922
Target:  5'- gGCCGuacucuCGCACGUCggc-GAcGGCGCa -3'
miRNA:   3'- -CGGCu-----GCGUGCAGauuuCUaUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 122793 0.69 0.968922
Target:  5'- cGCUGACGCAUGUCU------GGCAUUu -3'
miRNA:   3'- -CGGCUGCGUGCAGAuuucuaUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 44867 0.69 0.96564
Target:  5'- gGCCuGCGaCAUGUCUuuGGAaacguUGGCGCUg -3'
miRNA:   3'- -CGGcUGC-GUGCAGAuuUCU-----AUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 29334 0.69 0.96564
Target:  5'- gGCgCGGCGCGCG-CUGGGGu--GCGCc -3'
miRNA:   3'- -CG-GCUGCGUGCaGAUUUCuauCGUGa -5'
21234 3' -49.7 NC_004778.3 + 61373 0.69 0.962121
Target:  5'- cGCCGGCGCGuCGUCgcug---AGCGCc -3'
miRNA:   3'- -CGGCUGCGU-GCAGauuucuaUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 64864 0.69 0.961756
Target:  5'- aCCGACGUACGUUUGAauaugccAGcgGGCAa- -3'
miRNA:   3'- cGGCUGCGUGCAGAUU-------UCuaUCGUga -5'
21234 3' -49.7 NC_004778.3 + 17928 0.7 0.954349
Target:  5'- cGCCGGCGUcaGCuUCUaAGAGAUGcGCGCa -3'
miRNA:   3'- -CGGCUGCG--UGcAGA-UUUCUAU-CGUGa -5'
21234 3' -49.7 NC_004778.3 + 39205 0.7 0.950086
Target:  5'- aCCGAgUGgAUGgCUGAAGAUGGCACg -3'
miRNA:   3'- cGGCU-GCgUGCaGAUUUCUAUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 19975 0.7 0.945565
Target:  5'- cGCCGACcucgcuuuucggGCACGUCUGuacccgaaAAGcgAGUGCUa -3'
miRNA:   3'- -CGGCUG------------CGUGCAGAU--------UUCuaUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 44141 0.7 0.940783
Target:  5'- cGCCGGcCGCGCGUU---GGGcGGCGCg -3'
miRNA:   3'- -CGGCU-GCGUGCAGauuUCUaUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 23758 0.71 0.935738
Target:  5'- cGCCGAUGCuuGcagCUAAAG-UGGCACc -3'
miRNA:   3'- -CGGCUGCGugCa--GAUUUCuAUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 90239 0.71 0.935738
Target:  5'- cGCUGACGCACGugcacaaaUCUugcauGAUAGCAg- -3'
miRNA:   3'- -CGGCUGCGUGC--------AGAuuu--CUAUCGUga -5'
21234 3' -49.7 NC_004778.3 + 113887 0.71 0.930428
Target:  5'- gGCCGG-GCGCGUCgggcGAAGGcGGCGCc -3'
miRNA:   3'- -CGGCUgCGUGCAGa---UUUCUaUCGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.