miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21234 5' -48.8 NC_004778.3 + 99917 0.79 0.64642
Target:  5'- gAGAACGUcUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 100049 0.79 0.64642
Target:  5'- gAGAACGUcUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 122723 0.79 0.64642
Target:  5'- gAGAACaCcCGUACcCGAAAAGCGAGGu -3'
miRNA:   3'- -UCUUGcGaGCAUGaGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 122518 0.79 0.64642
Target:  5'- gGGAACGggUGUuCUCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCgaGCAuGAGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 66712 0.79 0.64642
Target:  5'- gAGAACGUcUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 66646 0.79 0.64642
Target:  5'- gAGAACGUcUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 19837 0.79 0.64642
Target:  5'- gAGAACGUcUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 19937 0.8 0.56079
Target:  5'- gAGAACGCUCGUACUgGAAAaacAGUGAc- -3'
miRNA:   3'- -UCUUGCGAGCAUGAgCUUU---UCGCUcc -5'
21234 5' -48.8 NC_004778.3 + 125099 0.8 0.592707
Target:  5'- gAGAACGUcUGUACUC-AAAAGCGGGGu -3'
miRNA:   3'- -UCUUGCGaGCAUGAGcUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 99410 0.81 0.529364
Target:  5'- ---uCG-UCGUACUCGGAAAGCGAGGu -3'
miRNA:   3'- ucuuGCgAGCAUGAGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 20200 0.83 0.44924
Target:  5'- -uAACGCUCGUuCcCGAAAAGCGAGGu -3'
miRNA:   3'- ucUUGCGAGCAuGaGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 23793 0.84 0.40269
Target:  5'- cGGcAACGCUCGUAC-CaGAAAAGCGGGGu -3'
miRNA:   3'- -UC-UUGCGAGCAUGaG-CUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 24188 0.84 0.40269
Target:  5'- cGGcAACGCUCGUAC-CaGAAAAGCGGGGu -3'
miRNA:   3'- -UC-UUGCGAGCAUGaG-CUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 23990 0.84 0.40269
Target:  5'- cGGcAACGCUCGUAC-CaGAAAAGCGGGGu -3'
miRNA:   3'- -UC-UUGCGAGCAUGaG-CUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 66841 0.84 0.376269
Target:  5'- aAGAACGUaUGUACcCGAAAAGCGAGGc -3'
miRNA:   3'- -UCUUGCGaGCAUGaGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 24255 0.84 0.40269
Target:  5'- gAGAACGCcCGUACUCGAAaAAGCGcGGu -3'
miRNA:   3'- -UCUUGCGaGCAUGAGCUU-UUCGCuCC- -5'
21234 5' -48.8 NC_004778.3 + 122409 0.85 0.351043
Target:  5'- -cAACaaUCGUACUCGAAAAGCGAGGu -3'
miRNA:   3'- ucUUGcgAGCAUGAGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 99983 0.86 0.304277
Target:  5'- gAGAACGUUUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGAGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 122249 0.87 0.28275
Target:  5'- -cAACGCUCGcACUUGAAAAGCGGGGu -3'
miRNA:   3'- ucUUGCGAGCaUGAGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 99301 0.88 0.255948
Target:  5'- gAGAACGCUCGUGCcCuAAAAGCGGGGu -3'
miRNA:   3'- -UCUUGCGAGCAUGaGcUUUUCGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.