Results 61 - 70 of 70 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 21234 | 5' | -48.8 | NC_004778.3 | + | 19913 | 0.92 | 0.1439 |
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Target: 5'- -uAACGCUCGUGCcCGAAAAGCGAGGu -3' miRNA: 3'- ucUUGCGAGCAUGaGCUUUUCGCUCC- -5' |
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| 21234 | 5' | -48.8 | NC_004778.3 | + | 23860 | 0.92 | 0.156009 |
|
Target: 5'- gAGAACGCcCGUACUCGAAAAGCGcGGu -3' miRNA: 3'- -UCUUGCGaGCAUGAGCUUUUCGCuCC- -5' |
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| 21234 | 5' | -48.8 | NC_004778.3 | + | 24057 | 0.92 | 0.156009 |
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Target: 5'- gAGAACGCcCGUACUCGAAAAGCGcGGu -3' miRNA: 3'- -UCUUGCGaGCAUGAGCUUUUCGCuCC- -5' |
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| 21234 | 5' | -48.8 | NC_004778.3 | + | 66722 | 0.93 | 0.125614 |
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Target: 5'- -aGACGCUCGUGCcCGAAAAGCGAGGu -3' miRNA: 3'- ucUUGCGAGCAUGaGCUUUUCGCUCC- -5' |
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| 21234 | 5' | -48.8 | NC_004778.3 | + | 24123 | 0.93 | 0.125614 |
|
Target: 5'- gAGAACGCcCGUACUCGAAAcGCGAGGu -3' miRNA: 3'- -UCUUGCGaGCAUGAGCUUUuCGCUCC- -5' |
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| 21234 | 5' | -48.8 | NC_004778.3 | + | 24322 | 0.93 | 0.125614 |
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Target: 5'- gAGAACGCcCGUACUCGAAAcGCGAGGu -3' miRNA: 3'- -UCUUGCGaGCAUGAGCUUUuCGCUCC- -5' |
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| 21234 | 5' | -48.8 | NC_004778.3 | + | 23926 | 0.93 | 0.132655 |
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Target: 5'- gAGAACGCcCGUACUCGAAAcGCGAGGc -3' miRNA: 3'- -UCUUGCGaGCAUGAGCUUUuCGCUCC- -5' |
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| 21234 | 5' | -48.8 | NC_004778.3 | + | 99237 | 0.94 | 0.115699 |
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Target: 5'- gAGAACGCUCGUAUUUGuAAAGCGAGGu -3' miRNA: 3'- -UCUUGCGAGCAUGAGCuUUUCGCUCC- -5' |
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| 21234 | 5' | -48.8 | NC_004778.3 | + | 99347 | 1.02 | 0.039663 |
|
Target: 5'- gAGAACGCUCGUGCcCGAAAAGCGAGGu -3' miRNA: 3'- -UCUUGCGAGCAUGaGCUUUUCGCUCC- -5' |
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| 21234 | 5' | -48.8 | NC_004778.3 | + | 66593 | 1.12 | 0.00961 |
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Target: 5'- gAGAACGCUCGUACUCGAAAAGCGAGGu -3' miRNA: 3'- -UCUUGCGAGCAUGAGCUUUUCGCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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