Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21234 | 5' | -48.8 | NC_004778.3 | + | 122573 | 0.75 | 0.845246 |
Target: 5'- -uAACaaUCGUACcCGAAAAGCGAGGu -3' miRNA: 3'- ucUUGcgAGCAUGaGCUUUUCGCUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 66874 | 0.73 | 0.904712 |
Target: 5'- aAGAuagcacuCGCUuuucggguacagaCGUuCUCGAAAAGCGAGGu -3' miRNA: 3'- -UCUu------GCGA-------------GCAuGAGCUUUUCGCUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 66808 | 0.73 | 0.904712 |
Target: 5'- aAGAuagcacuCGCUuuucggguacagaCGUuCUCGAAAAGCGAGGu -3' miRNA: 3'- -UCUu------GCGA-------------GCAuGAGCUUUUCGCUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 19999 | 0.73 | 0.904712 |
Target: 5'- aAGAuagcacuCGCUuuucggguacagaCGUuCUCGAAAAGCGAGGu -3' miRNA: 3'- -UCUu------GCGA-------------GCAuGAGCUUUUCGCUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 122350 | 0.73 | 0.911761 |
Target: 5'- -cAACaaUCGUACUCGAAAAGCaAGGu -3' miRNA: 3'- ucUUGcgAGCAUGAGCUUUUCGcUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 20155 | 0.72 | 0.92319 |
Target: 5'- aAGAuagcacuCGCUuuucggguacagaCGUGCcCGAAAAGCGAGGu -3' miRNA: 3'- -UCUu------GCGA-------------GCAUGaGCUUUUCGCUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 122324 | 0.71 | 0.953468 |
Target: 5'- -cGGCGCugcuuguuuucUCGUACUUGAAAAGCaAGGu -3' miRNA: 3'- ucUUGCG-----------AGCAUGAGCUUUUCGcUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 99447 | 0.71 | 0.957516 |
Target: 5'- uAGGGCaCgagCGUuCUCGAAAAGCGAGc -3' miRNA: 3'- -UCUUGcGa--GCAuGAGCUUUUCGCUCc -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 66585 | 0.7 | 0.971292 |
Target: 5'- cGAGCGUUC----UCGAAAAGCGAGu -3' miRNA: 3'- uCUUGCGAGcaugAGCUUUUCGCUCc -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 66454 | 0.7 | 0.971292 |
Target: 5'- cGAGCGUUC----UCGAAAAGCGAGu -3' miRNA: 3'- uCUUGCGAGcaugAGCUUUUCGCUCc -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 122580 | 0.7 | 0.974163 |
Target: 5'- gGGuACGggUGUuCUCGAAAAGCGAGu -3' miRNA: 3'- -UCuUGCgaGCAuGAGCUUUUCGCUCc -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 19706 | 0.7 | 0.974163 |
Target: 5'- gGGuACGggUGUuCUCGAAAAGCGAGu -3' miRNA: 3'- -UCuUGCgaGCAuGAGCUUUUCGCUCc -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 19992 | 0.7 | 0.97682 |
Target: 5'- gGGcACGUcUGUACcCGAAAAGCGAGu -3' miRNA: 3'- -UCuUGCGaGCAUGaGCUUUUCGCUCc -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 125228 | 0.7 | 0.97682 |
Target: 5'- -uAACaCUCGUACUUGAAAAuCGGGGu -3' miRNA: 3'- ucUUGcGAGCAUGAGCUUUUcGCUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 122661 | 0.69 | 0.981522 |
Target: 5'- gAGAACaCcCGUuCcCGAAAAGCGAGGu -3' miRNA: 3'- -UCUUGcGaGCAuGaGCUUUUCGCUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 122628 | 0.69 | 0.983586 |
Target: 5'- cGAccuCGCUUuu-CUCGAAAAGCGAGu -3' miRNA: 3'- uCUu--GCGAGcauGAGCUUUUCGCUCc -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 66922 | 0.69 | 0.987185 |
Target: 5'- --cGCGUacagaCGUuCUCGAAAAGUGAGGu -3' miRNA: 3'- ucuUGCGa----GCAuGAGCUUUUCGCUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 122819 | 0.69 | 0.98874 |
Target: 5'- cGAACaucUGUACUUGGAAAGCGGGa -3' miRNA: 3'- uCUUGcgaGCAUGAGCUUUUCGCUCc -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 114075 | 0.68 | 0.991406 |
Target: 5'- --cGCGCUCGcuCUCcgcGAGCGAGGa -3' miRNA: 3'- ucuUGCGAGCauGAGcuuUUCGCUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 89442 | 0.67 | 0.995237 |
Target: 5'- cGGACGCggaCGUGCuguacgUCGAAAAGCGc-- -3' miRNA: 3'- uCUUGCGa--GCAUG------AGCUUUUCGCucc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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