miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21234 5' -48.8 NC_004778.3 + 99347 1.02 0.039663
Target:  5'- gAGAACGCUCGUGCcCGAAAAGCGAGGu -3'
miRNA:   3'- -UCUUGCGAGCAUGaGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 99410 0.81 0.529364
Target:  5'- ---uCG-UCGUACUCGGAAAGCGAGGu -3'
miRNA:   3'- ucuuGCgAGCAUGAGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 99447 0.71 0.957516
Target:  5'- uAGGGCaCgagCGUuCUCGAAAAGCGAGc -3'
miRNA:   3'- -UCUUGcGa--GCAuGAGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 99473 0.78 0.699809
Target:  5'- -cAACaCUCGUACUCGAAAAGC-AGGg -3'
miRNA:   3'- ucUUGcGAGCAUGAGCUUUUCGcUCC- -5'
21234 5' -48.8 NC_004778.3 + 99785 0.79 0.64642
Target:  5'- gAGAACGUaUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 99851 0.79 0.64642
Target:  5'- gAGAACGUcUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 99917 0.79 0.64642
Target:  5'- gAGAACGUcUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 99983 0.86 0.304277
Target:  5'- gAGAACGUUUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGAGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 100049 0.79 0.64642
Target:  5'- gAGAACGUcUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 110991 0.66 0.998292
Target:  5'- cGAGCGCggccaCGUAgUCGAGcAAGUGAa- -3'
miRNA:   3'- uCUUGCGa----GCAUgAGCUU-UUCGCUcc -5'
21234 5' -48.8 NC_004778.3 + 114075 0.68 0.991406
Target:  5'- --cGCGCUCGcuCUCcgcGAGCGAGGa -3'
miRNA:   3'- ucuUGCGAGCauGAGcuuUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 122249 0.87 0.28275
Target:  5'- -cAACGCUCGcACUUGAAAAGCGGGGu -3'
miRNA:   3'- ucUUGCGAGCaUGAGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 122324 0.71 0.953468
Target:  5'- -cGGCGCugcuuguuuucUCGUACUUGAAAAGCaAGGu -3'
miRNA:   3'- ucUUGCG-----------AGCAUGAGCUUUUCGcUCC- -5'
21234 5' -48.8 NC_004778.3 + 122350 0.73 0.911761
Target:  5'- -cAACaaUCGUACUCGAAAAGCaAGGu -3'
miRNA:   3'- ucUUGcgAGCAUGAGCUUUUCGcUCC- -5'
21234 5' -48.8 NC_004778.3 + 122409 0.85 0.351043
Target:  5'- -cAACaaUCGUACUCGAAAAGCGAGGu -3'
miRNA:   3'- ucUUGcgAGCAUGAGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 122475 0.75 0.836696
Target:  5'- -cAACaaUCGUACcCGAAAAGCGAGGu -3'
miRNA:   3'- ucUUGcgAGCAUGaGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 122518 0.79 0.64642
Target:  5'- gGGAACGggUGUuCUCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCgaGCAuGAGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 122573 0.75 0.845246
Target:  5'- -uAACaaUCGUACcCGAAAAGCGAGGu -3'
miRNA:   3'- ucUUGcgAGCAUGaGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 122580 0.7 0.974163
Target:  5'- gGGuACGggUGUuCUCGAAAAGCGAGu -3'
miRNA:   3'- -UCuUGCgaGCAuGAGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 122628 0.69 0.983586
Target:  5'- cGAccuCGCUUuu-CUCGAAAAGCGAGu -3'
miRNA:   3'- uCUu--GCGAGcauGAGCUUUUCGCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.