miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21234 5' -48.8 NC_004778.3 + 110991 0.66 0.998292
Target:  5'- cGAGCGCggccaCGUAgUCGAGcAAGUGAa- -3'
miRNA:   3'- uCUUGCGa----GCAUgAGCUU-UUCGCUcc -5'
21234 5' -48.8 NC_004778.3 + 100049 0.79 0.64642
Target:  5'- gAGAACGUcUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 99983 0.86 0.304277
Target:  5'- gAGAACGUUUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGAGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 99917 0.79 0.64642
Target:  5'- gAGAACGUcUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 99851 0.79 0.64642
Target:  5'- gAGAACGUcUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 99785 0.79 0.64642
Target:  5'- gAGAACGUaUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 99473 0.78 0.699809
Target:  5'- -cAACaCUCGUACUCGAAAAGC-AGGg -3'
miRNA:   3'- ucUUGcGAGCAUGAGCUUUUCGcUCC- -5'
21234 5' -48.8 NC_004778.3 + 99447 0.71 0.957516
Target:  5'- uAGGGCaCgagCGUuCUCGAAAAGCGAGc -3'
miRNA:   3'- -UCUUGcGa--GCAuGAGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 99410 0.81 0.529364
Target:  5'- ---uCG-UCGUACUCGGAAAGCGAGGu -3'
miRNA:   3'- ucuuGCgAGCAUGAGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 99347 1.02 0.039663
Target:  5'- gAGAACGCUCGUGCcCGAAAAGCGAGGu -3'
miRNA:   3'- -UCUUGCGAGCAUGaGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 99301 0.88 0.255948
Target:  5'- gAGAACGCUCGUGCcCuAAAAGCGGGGu -3'
miRNA:   3'- -UCUUGCGAGCAUGaGcUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 99237 0.94 0.115699
Target:  5'- gAGAACGCUCGUAUUUGuAAAGCGAGGu -3'
miRNA:   3'- -UCUUGCGAGCAUGAGCuUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 98847 0.67 0.997547
Target:  5'- cGGAGCGCggcaCGUGCUCGuuGAagaacuguuGCGcGGc -3'
miRNA:   3'- -UCUUGCGa---GCAUGAGCuuUU---------CGCuCC- -5'
21234 5' -48.8 NC_004778.3 + 92877 0.66 0.998292
Target:  5'- gAGAACgGCUCGgcguccaGCUUGAGccgcAGCGAGc -3'
miRNA:   3'- -UCUUG-CGAGCa------UGAGCUUu---UCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 89442 0.67 0.995237
Target:  5'- cGGACGCggaCGUGCuguacgUCGAAAAGCGc-- -3'
miRNA:   3'- uCUUGCGa--GCAUG------AGCUUUUCGCucc -5'
21234 5' -48.8 NC_004778.3 + 84454 0.67 0.996549
Target:  5'- -aAGCGCaCGUGCUCGA--AGCGGu- -3'
miRNA:   3'- ucUUGCGaGCAUGAGCUuuUCGCUcc -5'
21234 5' -48.8 NC_004778.3 + 80565 0.66 0.998586
Target:  5'- -uGGCGC-CGUACUuugacgCGAucaucAGCGAGGg -3'
miRNA:   3'- ucUUGCGaGCAUGA------GCUuu---UCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 67041 0.67 0.997504
Target:  5'- -uGACGC-CGUACUCGAAAaaaaaacGGCGccGa -3'
miRNA:   3'- ucUUGCGaGCAUGAGCUUU-------UCGCucC- -5'
21234 5' -48.8 NC_004778.3 + 66922 0.69 0.987185
Target:  5'- --cGCGUacagaCGUuCUCGAAAAGUGAGGu -3'
miRNA:   3'- ucuUGCGa----GCAuGAGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 66874 0.73 0.904712
Target:  5'- aAGAuagcacuCGCUuuucggguacagaCGUuCUCGAAAAGCGAGGu -3'
miRNA:   3'- -UCUu------GCGA-------------GCAuGAGCUUUUCGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.