Results 61 - 70 of 70 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 21234 | 5' | -48.8 | NC_004778.3 | + | 20155 | 0.72 | 0.92319 |
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Target: 5'- aAGAuagcacuCGCUuuucggguacagaCGUGCcCGAAAAGCGAGGu -3' miRNA: 3'- -UCUu------GCGA-------------GCAUGaGCUUUUCGCUCC- -5' |
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| 21234 | 5' | -48.8 | NC_004778.3 | + | 20075 | 0.76 | 0.771608 |
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Target: 5'- cGAGCGUUC----UCGAAAAGCGAGGu -3' miRNA: 3'- uCUUGCGAGcaugAGCUUUUCGCUCC- -5' |
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| 21234 | 5' | -48.8 | NC_004778.3 | + | 19999 | 0.73 | 0.904712 |
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Target: 5'- aAGAuagcacuCGCUuuucggguacagaCGUuCUCGAAAAGCGAGGu -3' miRNA: 3'- -UCUu------GCGA-------------GCAuGAGCUUUUCGCUCC- -5' |
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| 21234 | 5' | -48.8 | NC_004778.3 | + | 19992 | 0.7 | 0.97682 |
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Target: 5'- gGGcACGUcUGUACcCGAAAAGCGAGu -3' miRNA: 3'- -UCuUGCGaGCAUGaGCUUUUCGCUCc -5' |
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| 21234 | 5' | -48.8 | NC_004778.3 | + | 19937 | 0.8 | 0.56079 |
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Target: 5'- gAGAACGCUCGUACUgGAAAaacAGUGAc- -3' miRNA: 3'- -UCUUGCGAGCAUGAgCUUU---UCGCUcc -5' |
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| 21234 | 5' | -48.8 | NC_004778.3 | + | 19913 | 0.92 | 0.1439 |
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Target: 5'- -uAACGCUCGUGCcCGAAAAGCGAGGu -3' miRNA: 3'- ucUUGCGAGCAUGaGCUUUUCGCUCC- -5' |
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| 21234 | 5' | -48.8 | NC_004778.3 | + | 19849 | 0.79 | 0.64642 |
|
Target: 5'- gAGAACaCcCGUACcCGAAAAGCGAGGu -3' miRNA: 3'- -UCUUGcGaGCAUGaGCUUUUCGCUCC- -5' |
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| 21234 | 5' | -48.8 | NC_004778.3 | + | 19837 | 0.79 | 0.64642 |
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Target: 5'- gAGAACGUcUGUACcCGAAAAGCGAGu -3' miRNA: 3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5' |
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| 21234 | 5' | -48.8 | NC_004778.3 | + | 19706 | 0.7 | 0.974163 |
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Target: 5'- gGGuACGggUGUuCUCGAAAAGCGAGu -3' miRNA: 3'- -UCuUGCgaGCAuGAGCUUUUCGCUCc -5' |
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| 21234 | 5' | -48.8 | NC_004778.3 | + | 1633 | 0.67 | 0.997547 |
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Target: 5'- --uGCGCUUGcUGCgcugCGGAAAGCGAc- -3' miRNA: 3'- ucuUGCGAGC-AUGa---GCUUUUCGCUcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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