Results 61 - 70 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21234 | 5' | -48.8 | NC_004778.3 | + | 122580 | 0.7 | 0.974163 |
Target: 5'- gGGuACGggUGUuCUCGAAAAGCGAGu -3' miRNA: 3'- -UCuUGCgaGCAuGAGCUUUUCGCUCc -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 122628 | 0.69 | 0.983586 |
Target: 5'- cGAccuCGCUUuu-CUCGAAAAGCGAGu -3' miRNA: 3'- uCUu--GCGAGcauGAGCUUUUCGCUCc -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 19706 | 0.7 | 0.974163 |
Target: 5'- gGGuACGggUGUuCUCGAAAAGCGAGu -3' miRNA: 3'- -UCuUGCgaGCAuGAGCUUUUCGCUCc -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 66585 | 0.7 | 0.971292 |
Target: 5'- cGAGCGUUC----UCGAAAAGCGAGu -3' miRNA: 3'- uCUUGCGAGcaugAGCUUUUCGCUCc -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 66454 | 0.7 | 0.971292 |
Target: 5'- cGAGCGUUC----UCGAAAAGCGAGu -3' miRNA: 3'- uCUUGCGAGcaugAGCUUUUCGCUCc -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 122880 | 0.76 | 0.800531 |
Target: 5'- gAGAACaucUGUACUUGGAAAGCGGGGu -3' miRNA: 3'- -UCUUGcgaGCAUGAGCUUUUCGCUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 122965 | 0.77 | 0.720797 |
Target: 5'- -uGGCaCUCGUACcCGAAAAGCGGGGu -3' miRNA: 3'- ucUUGcGAGCAUGaGCUUUUCGCUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 99473 | 0.78 | 0.699809 |
Target: 5'- -cAACaCUCGUACUCGAAAAGC-AGGg -3' miRNA: 3'- ucUUGcGAGCAUGAGCUUUUCGcUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 122518 | 0.79 | 0.64642 |
Target: 5'- gGGAACGggUGUuCUCGAAAAGCGAGu -3' miRNA: 3'- -UCUUGCgaGCAuGAGCUUUUCGCUCc -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 99347 | 1.02 | 0.039663 |
Target: 5'- gAGAACGCUCGUGCcCGAAAAGCGAGGu -3' miRNA: 3'- -UCUUGCGAGCAUGaGCUUUUCGCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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