miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21234 5' -48.8 NC_004778.3 + 1633 0.67 0.997547
Target:  5'- --uGCGCUUGcUGCgcugCGGAAAGCGAc- -3'
miRNA:   3'- ucuUGCGAGC-AUGa---GCUUUUCGCUcc -5'
21234 5' -48.8 NC_004778.3 + 19706 0.7 0.974163
Target:  5'- gGGuACGggUGUuCUCGAAAAGCGAGu -3'
miRNA:   3'- -UCuUGCgaGCAuGAGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 19837 0.79 0.64642
Target:  5'- gAGAACGUcUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 19849 0.79 0.64642
Target:  5'- gAGAACaCcCGUACcCGAAAAGCGAGGu -3'
miRNA:   3'- -UCUUGcGaGCAUGaGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 19913 0.92 0.1439
Target:  5'- -uAACGCUCGUGCcCGAAAAGCGAGGu -3'
miRNA:   3'- ucUUGCGAGCAUGaGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 19937 0.8 0.56079
Target:  5'- gAGAACGCUCGUACUgGAAAaacAGUGAc- -3'
miRNA:   3'- -UCUUGCGAGCAUGAgCUUU---UCGCUcc -5'
21234 5' -48.8 NC_004778.3 + 19992 0.7 0.97682
Target:  5'- gGGcACGUcUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCuUGCGaGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 19999 0.73 0.904712
Target:  5'- aAGAuagcacuCGCUuuucggguacagaCGUuCUCGAAAAGCGAGGu -3'
miRNA:   3'- -UCUu------GCGA-------------GCAuGAGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 20075 0.76 0.771608
Target:  5'- cGAGCGUUC----UCGAAAAGCGAGGu -3'
miRNA:   3'- uCUUGCGAGcaugAGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 20155 0.72 0.92319
Target:  5'- aAGAuagcacuCGCUuuucggguacagaCGUGCcCGAAAAGCGAGGu -3'
miRNA:   3'- -UCUu------GCGA-------------GCAUGaGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 20200 0.83 0.44924
Target:  5'- -uAACGCUCGUuCcCGAAAAGCGAGGu -3'
miRNA:   3'- ucUUGCGAGCAuGaGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 23793 0.84 0.40269
Target:  5'- cGGcAACGCUCGUAC-CaGAAAAGCGGGGu -3'
miRNA:   3'- -UC-UUGCGAGCAUGaG-CUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 23860 0.92 0.156009
Target:  5'- gAGAACGCcCGUACUCGAAAAGCGcGGu -3'
miRNA:   3'- -UCUUGCGaGCAUGAGCUUUUCGCuCC- -5'
21234 5' -48.8 NC_004778.3 + 23926 0.93 0.132655
Target:  5'- gAGAACGCcCGUACUCGAAAcGCGAGGc -3'
miRNA:   3'- -UCUUGCGaGCAUGAGCUUUuCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 23990 0.84 0.40269
Target:  5'- cGGcAACGCUCGUAC-CaGAAAAGCGGGGu -3'
miRNA:   3'- -UC-UUGCGAGCAUGaG-CUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 24057 0.92 0.156009
Target:  5'- gAGAACGCcCGUACUCGAAAAGCGcGGu -3'
miRNA:   3'- -UCUUGCGaGCAUGAGCUUUUCGCuCC- -5'
21234 5' -48.8 NC_004778.3 + 24123 0.93 0.125614
Target:  5'- gAGAACGCcCGUACUCGAAAcGCGAGGu -3'
miRNA:   3'- -UCUUGCGaGCAUGAGCUUUuCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 24188 0.84 0.40269
Target:  5'- cGGcAACGCUCGUAC-CaGAAAAGCGGGGu -3'
miRNA:   3'- -UC-UUGCGAGCAUGaG-CUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 24255 0.84 0.40269
Target:  5'- gAGAACGCcCGUACUCGAAaAAGCGcGGu -3'
miRNA:   3'- -UCUUGCGaGCAUGAGCUU-UUCGCuCC- -5'
21234 5' -48.8 NC_004778.3 + 24322 0.93 0.125614
Target:  5'- gAGAACGCcCGUACUCGAAAcGCGAGGu -3'
miRNA:   3'- -UCUUGCGaGCAUGAGCUUUuCGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.