miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21234 5' -48.8 NC_004778.3 + 66454 0.7 0.971292
Target:  5'- cGAGCGUUC----UCGAAAAGCGAGu -3'
miRNA:   3'- uCUUGCGAGcaugAGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 66585 0.7 0.971292
Target:  5'- cGAGCGUUC----UCGAAAAGCGAGu -3'
miRNA:   3'- uCUUGCGAGcaugAGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 99447 0.71 0.957516
Target:  5'- uAGGGCaCgagCGUuCUCGAAAAGCGAGc -3'
miRNA:   3'- -UCUUGcGa--GCAuGAGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 122324 0.71 0.953468
Target:  5'- -cGGCGCugcuuguuuucUCGUACUUGAAAAGCaAGGu -3'
miRNA:   3'- ucUUGCG-----------AGCAUGAGCUUUUCGcUCC- -5'
21234 5' -48.8 NC_004778.3 + 20155 0.72 0.92319
Target:  5'- aAGAuagcacuCGCUuuucggguacagaCGUGCcCGAAAAGCGAGGu -3'
miRNA:   3'- -UCUu------GCGA-------------GCAUGaGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 122350 0.73 0.911761
Target:  5'- -cAACaaUCGUACUCGAAAAGCaAGGu -3'
miRNA:   3'- ucUUGcgAGCAUGAGCUUUUCGcUCC- -5'
21234 5' -48.8 NC_004778.3 + 19999 0.73 0.904712
Target:  5'- aAGAuagcacuCGCUuuucggguacagaCGUuCUCGAAAAGCGAGGu -3'
miRNA:   3'- -UCUu------GCGA-------------GCAuGAGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 66808 0.73 0.904712
Target:  5'- aAGAuagcacuCGCUuuucggguacagaCGUuCUCGAAAAGCGAGGu -3'
miRNA:   3'- -UCUu------GCGA-------------GCAuGAGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 66874 0.73 0.904712
Target:  5'- aAGAuagcacuCGCUuuucggguacagaCGUuCUCGAAAAGCGAGGu -3'
miRNA:   3'- -UCUu------GCGA-------------GCAuGAGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 122573 0.75 0.845246
Target:  5'- -uAACaaUCGUACcCGAAAAGCGAGGu -3'
miRNA:   3'- ucUUGcgAGCAUGaGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 122475 0.75 0.836696
Target:  5'- -cAACaaUCGUACcCGAAAAGCGAGGu -3'
miRNA:   3'- ucUUGcgAGCAUGaGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 124977 0.75 0.827941
Target:  5'- cGGAACGUcUGUACUU-AAAAGCGGGGu -3'
miRNA:   3'- -UCUUGCGaGCAUGAGcUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 122880 0.76 0.800531
Target:  5'- gAGAACaucUGUACUUGGAAAGCGGGGu -3'
miRNA:   3'- -UCUUGcgaGCAUGAGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 20075 0.76 0.771608
Target:  5'- cGAGCGUUC----UCGAAAAGCGAGGu -3'
miRNA:   3'- uCUUGCGAGcaugAGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 122965 0.77 0.720797
Target:  5'- -uGGCaCUCGUACcCGAAAAGCGGGGu -3'
miRNA:   3'- ucUUGcGAGCAUGaGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 99473 0.78 0.699809
Target:  5'- -cAACaCUCGUACUCGAAAAGC-AGGg -3'
miRNA:   3'- ucUUGcGAGCAUGAGCUUUUCGcUCC- -5'
21234 5' -48.8 NC_004778.3 + 66646 0.79 0.64642
Target:  5'- gAGAACGUcUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 66712 0.79 0.64642
Target:  5'- gAGAACGUcUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 122518 0.79 0.64642
Target:  5'- gGGAACGggUGUuCUCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCgaGCAuGAGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 19837 0.79 0.64642
Target:  5'- gAGAACGUcUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.