miRNA display CGI


Results 41 - 60 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21235 3' -53.2 NC_004778.3 + 122971 0.82 0.247185
Target:  5'- uCGUaCcCGAAAAGCGGGGUUGGCGCc -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 122771 0.81 0.272565
Target:  5'- uGUaCUCGAAAAGUGGaGUCGGCGCUg -3'
miRNA:   3'- gCAaGAGCUUUUCGCUcCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 66457 0.79 0.356245
Target:  5'- gCGUUCUCGAAAAGCGAgugcuaucuuuagacGugcGUCGGCGCc -3'
miRNA:   3'- -GCAAGAGCUUUUCGCU---------------C---CAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 122589 0.78 0.427655
Target:  5'- uGUUCUCGAAAAGCGAGugcuauagacgugcGUCaGCGCc -3'
miRNA:   3'- gCAAGAGCUUUUCGCUC--------------CAGcCGCGa -5'
21235 3' -53.2 NC_004778.3 + 122527 0.78 0.427655
Target:  5'- uGUUCUCGAAAAGCGAGugcuauagacgugcGUCaGCGCc -3'
miRNA:   3'- gCAAGAGCUUUUCGCUC--------------CAGcCGCGa -5'
21235 3' -53.2 NC_004778.3 + 48920 0.76 0.516847
Target:  5'- ---aCUCGAAca-CGAGGUCGGCGCa -3'
miRNA:   3'- gcaaGAGCUUuucGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 122827 0.75 0.54723
Target:  5'- uGUaCUUGGAAAGCGGGaUCGGCGUUg -3'
miRNA:   3'- gCAaGAGCUUUUCGCUCcAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 99913 0.74 0.61992
Target:  5'- aCGUUCUCaAAAAGCaGGGUCGaCGCUg -3'
miRNA:   3'- -GCAAGAGcUUUUCGcUCCAGCcGCGA- -5'
21235 3' -53.2 NC_004778.3 + 99847 0.73 0.651371
Target:  5'- aCGUUCUCaAAAGGCaGGGUCGaCGCUg -3'
miRNA:   3'- -GCAAGAGcUUUUCGcUCCAGCcGCGA- -5'
21235 3' -53.2 NC_004778.3 + 99716 0.73 0.651371
Target:  5'- aCGUUCUCaAAAGGCaGGGUCGaCGCUg -3'
miRNA:   3'- -GCAAGAGcUUUUCGcUCCAGCcGCGA- -5'
21235 3' -53.2 NC_004778.3 + 66850 0.72 0.712566
Target:  5'- uGUaCcCGAAAAGCGAGGcuaucuuuaggcgUCGGCGCc -3'
miRNA:   3'- gCAaGaGCUUUUCGCUCC-------------AGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 60949 0.72 0.723758
Target:  5'- ---aCUCuu-GAGCGuGGUCGGCGCa -3'
miRNA:   3'- gcaaGAGcuuUUCGCuCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 99437 0.72 0.742846
Target:  5'- gCGUUCUCGAAAAGCGAGcgcuaucuuauacGUgCGucaGCGCg -3'
miRNA:   3'- -GCAAGAGCUUUUCGCUC-------------CA-GC---CGCGa -5'
21235 3' -53.2 NC_004778.3 + 122638 0.71 0.750777
Target:  5'- -uUUCUCGAAAAGCGAGugcuauaaacgugcGUCaGCGCc -3'
miRNA:   3'- gcAAGAGCUUUUCGCUC--------------CAGcCGCGa -5'
21235 3' -53.2 NC_004778.3 + 99245 0.71 0.782697
Target:  5'- uCGUaUUUGuAAAGCGAGGUC-GCGCUg -3'
miRNA:   3'- -GCAaGAGCuUUUCGCUCCAGcCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 117172 0.71 0.792081
Target:  5'- uGUUCguggUCGugccgguGGCGGGGUCGGUGUa -3'
miRNA:   3'- gCAAG----AGCuuu----UCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 66588 0.7 0.810385
Target:  5'- gCGUUCUCGAAAAGCGAGugcuaucuuuaGaCGuGCGUc -3'
miRNA:   3'- -GCAAGAGCUUUUCGCUC-----------CaGC-CGCGa -5'
21235 3' -53.2 NC_004778.3 + 124255 0.7 0.810385
Target:  5'- gCGUUcCUCGGcAGGGCGAucGGcagcUCGGCGCg -3'
miRNA:   3'- -GCAA-GAGCU-UUUCGCU--CC----AGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 125222 0.69 0.876152
Target:  5'- uCGUaCUUGAAAAuCGGGGUCaGCGCc -3'
miRNA:   3'- -GCAaGAGCUUUUcGCUCCAGcCGCGa -5'
21235 3' -53.2 NC_004778.3 + 19715 0.69 0.883411
Target:  5'- uGUUCUCGAAAAGCGAGugcuaucuuuaGaCGuGCGUc -3'
miRNA:   3'- gCAAGAGCUUUUCGCUC-----------CaGC-CGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.