miRNA display CGI


Results 41 - 60 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21235 3' -53.2 NC_004778.3 + 99847 0.73 0.651371
Target:  5'- aCGUUCUCaAAAGGCaGGGUCGaCGCUg -3'
miRNA:   3'- -GCAAGAGcUUUUCGcUCCAGCcGCGA- -5'
21235 3' -53.2 NC_004778.3 + 99913 0.74 0.61992
Target:  5'- aCGUUCUCaAAAAGCaGGGUCGaCGCUg -3'
miRNA:   3'- -GCAAGAGcUUUUCGcUCCAGCcGCGA- -5'
21235 3' -53.2 NC_004778.3 + 113919 0.66 0.959369
Target:  5'- gGUUCcucgcucgCGGAGAGCGAGcG-CGGCGg- -3'
miRNA:   3'- gCAAGa-------GCUUUUCGCUC-CaGCCGCga -5'
21235 3' -53.2 NC_004778.3 + 114070 0.67 0.937818
Target:  5'- uCGcUCUCcgcGAGCGAGGaacccgCGGCGCc -3'
miRNA:   3'- -GCaAGAGcuuUUCGCUCCa-----GCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 117172 0.71 0.792081
Target:  5'- uGUUCguggUCGugccgguGGCGGGGUCGGUGUa -3'
miRNA:   3'- gCAAG----AGCuuu----UCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 122239 0.68 0.897223
Target:  5'- ---aCUUGAAAAGCGGGGUCaaUGCUg -3'
miRNA:   3'- gcaaGAGCUUUUCGCUCCAGccGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122307 0.85 0.160444
Target:  5'- uCGUaCUUGAAAAGCaAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUUCGcUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122344 0.89 0.091632
Target:  5'- uCGUaCUCGAAAAGCaAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUUCGcUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122403 0.97 0.029422
Target:  5'- uCGUaCUCGAAAAGCGAGGUCGGCGCc -3'
miRNA:   3'- -GCAaGAGCUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 122469 0.91 0.069718
Target:  5'- uCGUaCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122527 0.78 0.427655
Target:  5'- uGUUCUCGAAAAGCGAGugcuauagacgugcGUCaGCGCc -3'
miRNA:   3'- gCAAGAGCUUUUCGCUC--------------CAGcCGCGa -5'
21235 3' -53.2 NC_004778.3 + 122567 0.91 0.069718
Target:  5'- uCGUaCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122589 0.78 0.427655
Target:  5'- uGUUCUCGAAAAGCGAGugcuauagacgugcGUCaGCGCc -3'
miRNA:   3'- gCAAGAGCUUUUCGCUC--------------CAGcCGCGa -5'
21235 3' -53.2 NC_004778.3 + 122638 0.71 0.750777
Target:  5'- -uUUCUCGAAAAGCGAGugcuauaaacgugcGUCaGCGCc -3'
miRNA:   3'- gcAAGAGCUUUUCGCUC--------------CAGcCGCGa -5'
21235 3' -53.2 NC_004778.3 + 122653 0.99 0.02284
Target:  5'- cCGUUCcCGAAAAGCGAGGUCGGCGCUu -3'
miRNA:   3'- -GCAAGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122699 0.66 0.953944
Target:  5'- uGUUCUCGAAaaacAAGUGcuaucuuuagacuGcGUCGGCGCc -3'
miRNA:   3'- gCAAGAGCUU----UUCGCu------------C-CAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 122715 0.91 0.065984
Target:  5'- cCGUaCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122771 0.81 0.272565
Target:  5'- uGUaCUCGAAAAGUGGaGUCGGCGCUg -3'
miRNA:   3'- gCAaGAGCUUUUCGCUcCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122780 0.9 0.084448
Target:  5'- uCGcUUUUCGAGAaaAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GC-AAGAGCUUU--UCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122825 0.91 0.065984
Target:  5'- cCGUaCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.